View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6625_high_52 (Length: 242)
Name: NF6625_high_52
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4008054 - 4008288
Alignment:
| Q |
1 |
tcaacattactttcaacatagttatgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4008054 |
tcaacattactttcaacatagttatgttccagtgtcgataaatgttgatatgcaaacttcattatattgatttgaatattcaactcaatatttataagag |
4008153 |
T |
|
| Q |
101 |
aacgtttatccaggttcaaacaattccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacagtctttagtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
4008154 |
aacgtttatccaggttcaaacaattccataacagaacccttttcttgttttccttgaactgttcagaagctgttaaagggaaccatacagtcttcagtga |
4008253 |
T |
|
| Q |
201 |
ttcacattcacccaatagagtttcaagtgatgatg |
235 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
4008254 |
ttcacattcagccaatagagtttcaagtgatgatg |
4008288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3999049 - 3999180
Alignment:
| Q |
1 |
tcaacattactttcaacatagttatgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
3999049 |
tcaacattactttcaacatagttatgttccaatgtcgaataatgttgatatgcaaactttattatattgatttgaatattcaactcaacatttatgtgag |
3999148 |
T |
|
| Q |
101 |
aacgtttatccaggttcaaacaattccataac |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
3999149 |
aacgtttatccaggttcaaacaattccataac |
3999180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4023212 - 4023444
Alignment:
| Q |
1 |
tcaacattactttcaacatagttatgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagag |
100 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||| || | ||| ||||| | ||||||| |||||||||| |||| |
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|
| T |
4023212 |
tcaacataactttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgagag |
4023311 |
T |
|
| Q |
101 |
aacgtttatccaggttcaaacaattccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacagtctttagtga |
200 |
Q |
| |
|
|| ||| ||||| |||| | |||||||| ||| || |||||||||||||| |||||| ||||||||| ||||| | ||||||||||||||||| ||||| |
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|
| T |
4023312 |
aatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagtga |
4023411 |
T |
|
| Q |
201 |
ttcacattcacccaatagagtttcaagtgatga |
233 |
Q |
| |
|
| ||||||| | | ||||||||||| |||||| |
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|
| T |
4023412 |
tctacattcaacaagtagagtttcaactgatga |
4023444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 3921999 - 3921817
Alignment:
| Q |
24 |
atgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagagaacgtttatccaggttcaaacaa |
123 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| | ||||||||| | ||||||| |||||||||| |||||| ||| ||||| ||| || ||| |
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|
| T |
3921999 |
atgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgatttgcagattcaacccaatatttatcagagaaagttcatccaagttgaagcaa |
3921900 |
T |
|
| Q |
124 |
ttccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcaca |
206 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||| ||||||| | ||||| | ||||||||||||||||||||||||||||| |
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|
| T |
3921899 |
ttccagaactcaacccttttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagtctttagtgattcaca |
3921817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 3985159 - 3985370
Alignment:
| Q |
24 |
atgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagagaacgtttatccaggttcaaacaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||||| |||||||||| |||||||||| ||||| || || ||| |
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|
| T |
3985159 |
atgttccagtgtcgataaatgttgatatgcaaactccatcaaattgatttgaagattcaacccaatatttatgagagaacgttcatccaatttgaagcaa |
3985258 |
T |
|
| Q |
124 |
ttccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcacattcacccaatagagttt |
223 |
Q |
| |
|
||||| ||| || |||||||||||||| ||| || ||||||| | ||||| | ||||| ||||||| ||| ||||| |||| ||| | | |||||||| |
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|
| T |
3985259 |
ttccagaactcaatccttttcttgttttcctttaattgttcagcaactgttgaagggaaaaatacagacttcagtgacacacagtcaacaagtagagttt |
3985358 |
T |
|
| Q |
224 |
caagtgatgatg |
235 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3985359 |
caagtgatgatg |
3985370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 4000319 - 4000526
Alignment:
| Q |
24 |
atgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagagaacgtttatccaggttcaaacaa |
123 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| |||| |||||||| ||||| ||| ||||||||| |||||| ||| ||||| ||| || ||| |
|
|
| T |
4000319 |
atgttccagtgtcaataaatgttgatatgcaaacttgattagattgattttcatattgaacccaatatttacgagagaatgttcatccaagttgaagcaa |
4000418 |
T |
|
| Q |
124 |
ttccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcacattcacccaatagagttt |
223 |
Q |
| |
|
||||| ||| || |||||||||||||| |||||| ||||||||| |||| | ||||||||||||||||| |||||| ||||||| | | |||||||| |
|
|
| T |
4000419 |
ttccagaactcaatccttttcttgttttccttgaattgttcagaaattgttgaagggaacaatacagtcttcagtgatatacattcaacaagtagagttt |
4000518 |
T |
|
| Q |
224 |
caagtgat |
231 |
Q |
| |
|
||| |||| |
|
|
| T |
4000519 |
caactgat |
4000526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 3935347 - 3935165
Alignment:
| Q |
24 |
atgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagagaacgtttatccaggttcaaacaa |
123 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| ||||||||| | ||||||||| | ||||||| |||||||||| |||||||| | ||||| |||||| ||| |
|
|
| T |
3935347 |
atgttccactgttgataaatcttgatatgcaaacttcatcaaattgatttgcagattcaacccaatatttatcagagaacgctcatccaagttcaagcaa |
3935248 |
T |
|
| Q |
124 |
ttccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcaca |
206 |
Q |
| |
|
||||| ||| ||| ||||||||||| |||||| ||||||| | ||||| | ||||||||||||| ||| ||||| ||||| |
|
|
| T |
3935247 |
ttccagaacttaacttctttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagacttcagtgagtcaca |
3935165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 3815805 - 3815949
Alignment:
| Q |
56 |
acttcattatattgatttgaatattcaactcaatatttataagagaacgtttatccaggttcaaacaattccataacagaacccttttcttgtttttctt |
155 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||| |||||| ||||||| || ||||| |||| |||||||| ||| ||| ||||||||||||| ||| |
|
|
| T |
3815805 |
acttcattaaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttctcgcaattccagaactcaacacttttcttgttttcctt |
3815904 |
T |
|
| Q |
156 |
gaactgttcagaagctgttaatgggaacaatacagtctttagtga |
200 |
Q |
| |
|
||| ||||||| | ||||| | ||||||||||||||||| ||||| |
|
|
| T |
3815905 |
gaattgttcagcaactgttgaagggaacaatacagtcttcagtga |
3815949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 3808231 - 3808376
Alignment:
| Q |
56 |
acttcattatattgatttgaatattcaactcaatatttataagagaacgtttatccaggttcaaacaattccataacagaacccttttcttgtttttctt |
155 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||| |||||| ||||||| || ||||| |||| |||| ||| ||| ||| ||||||||||||| ||| |
|
|
| T |
3808231 |
acttcattaaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttcttgcaatgccagaactcaacacttttcttgttttcctt |
3808330 |
T |
|
| Q |
156 |
gaactgttcagaagctgttaatgggaacaatacagtctttagtgat |
201 |
Q |
| |
|
||| ||||||| | ||||| | ||||||||||||||||| |||||| |
|
|
| T |
3808331 |
gaattgttcagcaactgttgaagggaacaatacagtcttcagtgat |
3808376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 3800006 - 3800195
Alignment:
| Q |
1 |
tcaacattactttcaacatagttatgttccagtgtcgataaatgttgatatgtaaacttcattatattgatttgaatattcaactcaatatttataagag |
100 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| | ||| || || | ||||||| | ||| ||| |||| |
|
|
| T |
3800006 |
tcaacataactttcagcatacttatgttccagtgtcgataaatgttgatatgcaaacttcatcaaattaatctgtagattcaaccaattatgtatgagag |
3800105 |
T |
|
| Q |
101 |
aacgtttatccaggttcaaacaattccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacag |
190 |
Q |
| |
|
|| ||| || | |||||| |||||||| || || | |||||||||||| ||| || ||| ||| | ||||| | ||||||||||||| |
|
|
| T |
3800106 |
aaagttcttcaaagttcaagcaattccaaaagttaatcattttcttgttttcctttaattgtccagcaactgttgaagggaacaatacag |
3800195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4216974 - 4217035
Alignment:
| Q |
1 |
tcaacattactttcaacatagttatgttccagtgtcgataaatgttgatatgtaaacttcat |
62 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4216974 |
tcaacataactttcatcatacttatgttccagtgtcgataaatgttgatatgcaaacatcat |
4217035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 3936950 - 3936823
Alignment:
| Q |
58 |
ttcattatattgatttgaatattcaactcaatatttataagagaacgtttatccaggttcaaacaattccataacagaacccttttcttgtttttcttga |
157 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||| ||||||| |||| || |||| | |||||||| ||| ||| ||||| ||||||| ||| | |
|
|
| T |
3936950 |
ttcattaaattgatttgaacattcaacccaatatttatgagagaacatttaatcaagttccagcaattccagaactcaactctttt-ttgttttccttta |
3936852 |
T |
|
| Q |
158 |
actgttcagaagctgttaatgggaacaat |
186 |
Q |
| |
|
| ||||||| | ||||| | ||||||||| |
|
|
| T |
3936851 |
attgttcagcaactgttgaagggaacaat |
3936823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 13396080 - 13396214
Alignment:
| Q |
99 |
agaacgtttatccaggttcaaacaattccataacagaacccttttcttgtttttcttgaactgttcagaagctgttaatgggaacaatacagtctttagt |
198 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| ||| | |||||||||||||| |||||| ||||| | | || || | ||||||| ||||| ||| ||| |
|
|
| T |
13396080 |
agaacgttcatccaagttcaagcaattccaaaactctatccttttcttgttttccttgaattgttcggtaacttttgaagggaacactacagacttcagt |
13396179 |
T |
|
| Q |
199 |
gattcacattcacccaatagagtttcaagtgatga |
233 |
Q |
| |
|
|| | ||||||| | | |||||||||||||||||| |
|
|
| T |
13396180 |
gacttacattcaacaattagagtttcaagtgatga |
13396214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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