View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6625_high_53 (Length: 236)
Name: NF6625_high_53
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 35381797 - 35381658
Alignment:
| Q |
83 |
tatgttggaaagtttaggtgagttgggttccaaaaatgtgaagttacctgatttaaaagtcctagacttatcacctttgctccatttaactcagcttcta |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35381797 |
tatgttggaaagtttaggtgagttgggttccaaaaatgtgaagttacctgatttaaaagtcctagacttatcacctttgctccatttaactcagcttcta |
35381698 |
T |
|
| Q |
183 |
taattgtctcttcaatcaagttgttccatgttagcttctg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35381697 |
taattgtctcttcaatcaagttgttccatgttagcttctg |
35381658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 35355742 - 35355654
Alignment:
| Q |
127 |
tacctgatttaaaagtcctagacttatcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgttccatgtta |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||| |||||| |
|
|
| T |
35355742 |
tacctgatttaaaagtcctaaacttatcacctttgctccatttaattcagcctccataattgtttcttcaatcaagttgttcaatgtta |
35355654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 35371177 - 35371098
Alignment:
| Q |
128 |
acctgatttaaaagtcctagacttatcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgtt |
207 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||| |
|
|
| T |
35371177 |
accttattaaaaagtcctagacttatcacctttgctccatttaactcagcctccacaattgcctcttcaatcaagttgtt |
35371098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 19685715 - 19685634
Alignment:
| Q |
126 |
ttacctgatttaaaagtcctagacttatcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgtt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
19685715 |
ttacctgatttaaaagtcctagacttatcacctttactccacttaaatcagccatcattattgtctcttcaatcaatttgtt |
19685634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 19628915 - 19629001
Alignment:
| Q |
121 |
tgaagttacctgatttaaaagtcctagacttatcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgtt |
207 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
19628915 |
tgaatttacctggtttaaaagtcctagacttatcacctttactccacttaaatcagccatcattattgtctcttcaatcaatttgtt |
19629001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University