View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_high_7 (Length: 594)
Name: NF6625_high_7
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 25900055 - 25900419
Alignment:
| Q |
19 |
acatagatgattttttaatttaatattgtaaaaatgatgccttcttttaagtttcaagtgtatgaagagctttgttaatgtcttcttctaacgttgttac |
118 |
Q |
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| T |
25900055 |
acatagatgattttttaatttaatattgtaaaaatgatgccttcttttaagtttcaagtgtacgaagagctttgttaatgtcttct---aacgttgttac |
25900151 |
T |
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| Q |
119 |
ataaaatgaccaaacagacctacgccaaatatcgcagatgagttatctga-----agtatgagcatacaaccgcaaacaaaccaactactcccgcacatt |
213 |
Q |
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| T |
25900152 |
ataaaatgaccaaacagacccacgccaaatatcgtacatgagttatctgatctgaagtatgagcatacaaacgcaaacaaaccaactactcccacacatt |
25900251 |
T |
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| Q |
214 |
gtaactggtctcacaccatatcaaaaagtcatgaccaaatagtgtagtttacatacatcatgtgaaatacaatacctcaaagagcagctcatctggtaag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900252 |
gtaactggtctcacaccatatcaaaaagtcatgaccaaatagtgtagtt-acatacatcatgtgaaatacaatacctcaaagagcagctcatctggtaag |
25900350 |
T |
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| Q |
314 |
caacggtgtaaaagagaagaatcaacatgaggctttctacttgcactaccaaatggcacaacaggtctc |
382 |
Q |
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| T |
25900351 |
caacggtgtaaaagagaagaatcaacatgaggctttctacttgcactaccaaatggcgcaacaggtctc |
25900419 |
T |
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Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 39 - 382
Target Start/End: Complemental strand, 40068135 - 40067818
Alignment:
| Q |
39 |
taatattgtaaaaatgatgccttcttttaagtttcaagtgtatgaagagctttgttaatgtcttcttctaacgttgttacataaaa-tgaccaaacagac |
137 |
Q |
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| T |
40068135 |
taatattgtaaaaatgatgccttcatttaagtttcaggtgtatgaagagatctgccaatgtcttct---aacgatgttgcataaaaatgaccaaacagat |
40068039 |
T |
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| Q |
138 |
ctacgccaaatatcgcagatgagttatctgaagtatgagcatacaaccgcaaacaaaccaactactcccgcacattgtaactggtctcacaccatatcaa |
237 |
Q |
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| T |
40068038 |
ccacatcaaatatcgcatatgagttgtctgaagtaggaacatacaac-----acaaataaagt--------------taactagtgtcacacaatatcaa |
40067958 |
T |
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| Q |
238 |
aaagtcatgaccaaatagtgtagtttacatacatcatgtgaaatacaatacctcaaagagcagctcatctggtaagcaacggtgtaaaagagaagaatca |
337 |
Q |
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| T |
40067957 |
gaagtcatgatcaaatagtgtagctg-----catcatatgaaatgcaatacctcaaagagcagctcatctggtaagcaacgatgtaaaagagaagaatca |
40067863 |
T |
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| Q |
338 |
acatgaggctttctacttgcactaccaaatggcacaacaggtctc |
382 |
Q |
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| T |
40067862 |
acatgaggctttctacttgcacttccaaaaggcgcgacaggtctc |
40067818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 551 - 583
Target Start/End: Original strand, 6844011 - 6844043
Alignment:
| Q |
551 |
gctgaatagcttctaactaactcacaggttctg |
583 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
6844011 |
gctgaatagcttctaactcactcacaggttctg |
6844043 |
T |
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