View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_10 (Length: 558)
Name: NF6625_low_10
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 33505738 - 33505208
Alignment:
| Q |
18 |
taacattctatacagtcaaataattgtacttaaatataaattaaatctaaccacaaaatgttggattcatcggtgataaatgctaatctaaaattcagag |
117 |
Q |
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| T |
33505738 |
taacattctatacaatcaaatagttgtacttaaatataaattaaatctaaccacaaaatgttggattcatcggtgacaaaagctaatctagaattcagag |
33505639 |
T |
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| Q |
118 |
taaaaacagttaattaacagaaatagaattcaaatttgatactttataatataaatcatctagcgaccgctataagagaatagagaga--tattagatat |
215 |
Q |
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| T |
33505638 |
taaaaacagttaattaacagaaatagaattcaaatttgatactttataatataaatcatctagcgaccgctataaaagaatagagagagatattagatat |
33505539 |
T |
|
| Q |
216 |
atatgtgatgaattaataaacaggaaatattattgttctattccttttaccgaaaagnnnnnnnnnnngttaagcaggaggcaaataaccatgtacgtgt |
315 |
Q |
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| T |
33505538 |
atatgtgatgaattaataa-caggaaatattattgttctattccttttaccgaaaagaaaaaaaaaaagttaagcaggaggcaaataaccatgtacgtgt |
33505440 |
T |
|
| Q |
316 |
tgcatgcttgcgttgcatggctattaacacgtggcacctactaatccctcccacgtatcaccctttcggtgtctcatatatattacttagcatcaaagag |
415 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33505439 |
tgcatgcttgcattgcatggctattaacacgtggcacctactaatccctcccacgtatcaccctttcggtgtctcatatatattacttagcatcaaagag |
33505340 |
T |
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| Q |
416 |
atcaagagaggaaataagaaattaactgcaaacaaacggttatggcgatgaagctcaagtatctatcctccattgctgaggatgttgttgctagatgtgc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33505339 |
atcaagagaggaaataagaaattaactgcaaacaaacggttatggcgatgaagctcaagtatctatcctccattgctgaggatgttgttgctagatgtgc |
33505240 |
T |
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| Q |
516 |
acagtacgtaatattaatactctcctattcat |
547 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33505239 |
acagtacgtaatattaatactctcctattcat |
33505208 |
T |
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