View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_12 (Length: 489)
Name: NF6625_low_12
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 5655886 - 5656348
Alignment:
| Q |
19 |
caatgagtagttttgtcttctccccttctcttcttcctaccaactcataatctccattccaagaagaatacagtatagtgatttcaaaataagcttcttg |
118 |
Q |
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| T |
5655886 |
caatgagtagttttgtcttctccccttctcttcttcctaccaactcataatctccattccaagaagaatacagtatagtgatttcaaaataagcttcttg |
5655985 |
T |
|
| Q |
119 |
tggaaatgcatggttccccaaaaaaggaccaggaagaggcagagaagtcctaataacagaagcaacacttgtagaagtgttgttaagatgnnnnnnncac |
218 |
Q |
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| T |
5655986 |
tggaaatgcatggttccccaaaaaaggaccaggaagaggcagagaagtcctaataacagaagcaacacttgtagaagtgttgttaggatgaaaaaaacac |
5656085 |
T |
|
| Q |
219 |
tcttttaaaccaggattgagtctaaccttctgcatgaattcatttgatccttgacaaacttcccagtttatttcagcctcattttctcttccaaattcat |
318 |
Q |
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| T |
5656086 |
tcttttaaaccaggattgagtctaaccttctgcatgaattcatttgatccttgacaaacttcccagtttatttcagcctcattttctcttccaaattcat |
5656185 |
T |
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| Q |
319 |
cactacctccacatgatcctaatagtgttgatgaagttgannnnnnngatgaaatattgctcatgtagctagtgaaagcaaatcttgaccatccattttc |
418 |
Q |
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| T |
5656186 |
cactacctccacatgatcctaatagtgttgatgaagttgatttttttgatgaaatattactcatgtagctagtgaaagcaaatcttgaccatccattttc |
5656285 |
T |
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| Q |
419 |
tatagcatcagaagctaggtatggatgatcattccaactgaacaaatcttttcttcctttgct |
481 |
Q |
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| T |
5656286 |
tatagcatcagaagctagatatggatgatcattccagttgaacaaatcttttcttcctttgct |
5656348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 47047714 - 47047669
Alignment:
| Q |
384 |
tagctagtgaaagcaaatcttgaccatccattttctatagcatcag |
429 |
Q |
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| T |
47047714 |
tagctagtgaaagcaaatcttgaccatccattttcaacagcatcag |
47047669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 47047996 - 47047944
Alignment:
| Q |
99 |
atttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccagg |
151 |
Q |
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| T |
47047996 |
atttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccagg |
47047944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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