View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_15 (Length: 464)

Name: NF6625_low_15
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_15
NF6625_low_15
[»] scaffold0085 (2 HSPs)
scaffold0085 (1-307)||(50612-50917)
scaffold0085 (394-447)||(50473-50525)
[»] chr1 (5 HSPs)
chr1 (41-125)||(7347678-7347762)
chr1 (50-125)||(46937555-46937630)
chr1 (41-116)||(35220793-35220868)
chr1 (50-123)||(49825844-49825917)
chr1 (89-133)||(5095822-5095866)
[»] chr8 (2 HSPs)
chr8 (41-125)||(1310115-1310199)
chr8 (44-112)||(7864481-7864548)
[»] chr4 (1 HSPs)
chr4 (43-134)||(26275534-26275625)
[»] chr7 (1 HSPs)
chr7 (43-130)||(30900106-30900193)
[»] chr5 (3 HSPs)
chr5 (50-116)||(27725501-27725567)
chr5 (50-132)||(9634949-9635030)
chr5 (70-116)||(33178399-33178445)
[»] chr3 (4 HSPs)
chr3 (46-124)||(36060251-36060329)
chr3 (41-133)||(33947627-33947719)
chr3 (43-113)||(162900-162970)
chr3 (53-133)||(54084289-54084369)
[»] chr6 (2 HSPs)
chr6 (50-131)||(13427711-13427792)
chr6 (42-125)||(9641085-9641168)
[»] chr2 (2 HSPs)
chr2 (41-110)||(11530029-11530098)
chr2 (50-111)||(17442970-17443031)


Alignment Details
Target: scaffold0085 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 50917 - 50612
Alignment:
Q  1 gttttattcaatttttgctaggcaatagtgctataacaacctatagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatt 100  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50917 gttttattcaattttcgctacgcaatagtgctataacaacctatagcctctatttcacaatatcttgaactaaatagtgtatttcggaacaattgcaatt 50818  T
Q  101 tgttcaaattctgctaagcaatagctctatagctgccnnnnnnnnnnnnggcactgccatnnnnnnncaacacttatttacatcgatatcgcggtttcca 200  Q
    |||||||||||||||||||||||||||||||||||||            ||||| |||||       |||||||||||||||||||||||||||||||||    
T  50817 tgttcaaattctgctaagcaatagctctatagctgccaaaaaaaaaaa-ggcaccgccataaaaaaacaacacttatttacatcgatatcgcggtttcca 50719  T
Q  201 ttctttctctattacttgcattttatcttcatttctacttattgattttatcactttcttgcttatacgcgctttctatatgatgtaccatcatctttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50718 ttctttctctattacttgcattttatcttcatttctacttattgattttatcactttcttgcttatacgcgctttctatatgatgtaccatcatctttaa 50619  T
Q  301 cctgcat 307  Q
    |||||||    
T  50618 cctgcat 50612  T

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Target: scaffold0085; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 50525 - 50473
Alignment:
Q  394 agagctatcttatttatttggtttgatttttataagctgtctaatactactact 447  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| |||||||    
T  50525 agagctatcttatttatttgatttt-tttttataagctgtctaataatactact 50473  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 7347762 - 7347678
Alignment:
Q  41 ctatagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagc 125  Q
    |||||||| |||||||||||||| ||| ||||||||||||||| |  |||||| |||||||||||||||||||||| ||||||||    
T  7347762 ctatagccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgctatgcaatagc 7347678  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 46937630 - 46937555
Alignment:
Q  50 ctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagc 125  Q
    |||||||||||||| ||| ||||||||| | ||  ||||||||| ||| ||||||||||||| |||||||||||||    
T  46937630 ctatttcacaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaattccgctaagcaatagc 46937555  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 35220868 - 35220793
Alignment:
Q  41 ctatagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgcta 116  Q
    |||||||  |||||||||||||| ||| |||| |||  ||||| |||||||||||| ||||||||| |||||||||    
T  35220868 ctatagcaactatttcacaatattttgtactagataacgtattgcggaacaattgctatttgttcagattctgcta 35220793  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 49825917 - 49825844
Alignment:
Q  50 ctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaata 123  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||| |   |||  ||||||||||||| ||||||    
T  49825917 ctatttcacaatattttgtactaaatagtgtattgcagaacaatagtgttttagtcaaattctgctatgcaata 49825844  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 5095866 - 5095822
Alignment:
Q  89 acaattgcaatttgttcaaattctgctaagcaatagctctatagc 133  Q
    ||||| |||||||||||||||||||||| || | |||||||||||    
T  5095866 acaatagcaatttgttcaaattctgctatgctagagctctatagc 5095822  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 1310199 - 1310115
Alignment:
Q  41 ctatagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagc 125  Q
    |||||||| |||||||||||||| ||| ||||||||||||||   |||||||| |||||||||||||||||||||| | ||||||    
T  1310199 ctatagccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattctgctacgaaatagc 1310115  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 7864548 - 7864481
Alignment:
Q  44 tagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattct 112  Q
    ||||||||| |  ||||||| ||| ||||||||||||||| ||||| ||| | ||||||||||||||||    
T  7864548 tagcctctactagacaatat-ttgtactaaatagtgtattgcggaataatagaaatttgttcaaattct 7864481  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 26275534 - 26275625
Alignment:
Q  43 atagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagctctatagct 134  Q
    |||||| |||||||||||||| ||| ||||||||| |||||| |||||||| || |||||||||||| | |||| |||||||  ||||||||    
T  26275534 atagccgctatttcacaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaatcccgctatgcaatagtgctatagct 26275625  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 30900106 - 30900193
Alignment:
Q  43 atagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagctctat 130  Q
    |||||| |||||||||||||| ||| ||||||||||||||  | ||||||| || ||| |||||||||| |||| |||||||| ||||    
T  30900106 atagccactatttcacaatattttgtactaaatagtgtatcgctgaacaatagcgattcgttcaaattccgctatgcaatagcactat 30900193  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 27725567 - 27725501
Alignment:
Q  50 ctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgcta 116  Q
    |||||| ||||||| ||| ||||||||||| ||| |||||||||||  |||||||||||||||||||    
T  27725567 ctatttgacaatattttgtactaaatagtggattgcggaacaattgtgatttgttcaaattctgcta 27725501  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 9634949 - 9635030
Alignment:
Q  50 ctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagctctatag 132  Q
    |||||||| ||||| ||  || |||||||||||  ||||||||| || |||||||||||||| |||||||||| || ||||||    
T  9634949 ctatttcaaaatattttatacaaaatagtgtatg-cggaacaatagccatttgttcaaattccgctaagcaatggcactatag 9635030  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 33178445 - 33178399
Alignment:
Q  70 ctaaatagtgtatttcggaacaattgcaatttgttcaaattctgcta 116  Q
    ||||| |||||||| | ||||||| ||||||||||||||||||||||    
T  33178445 ctaaaaagtgtattgcagaacaatggcaatttgttcaaattctgcta 33178399  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 36060329 - 36060251
Alignment:
Q  46 gcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatag 124  Q
    |||||||||||||||||| ||| ||||||||  |||||  ||||||| ||| ||||||||||||||||| | |||||||    
T  36060329 gcctctatttcacaatattttgtactaaataacgtattgtggaacaaatgcgatttgttcaaattctgcaatgcaatag 36060251  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 33947719 - 33947627
Alignment:
Q  41 ctatagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagctctatagc 133  Q
    ||||||||||||||||| ||||| ||  ||| ||| |||||| || ||||||| |   ||||||||||||||| || |||||||| |||||||    
T  33947719 ctatagcctctatttcaaaatattttttactgaatggtgtatctctgaacaatagtgttttgttcaaattctgttatgcaatagcactatagc 33947627  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 162970 - 162900
Alignment:
Q  43 atagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctg 113  Q
    ||||||||||||||||||||| ||| ||||||||| | ||  | ||| |||  ||||||||||||||||||    
T  162970 atagcctctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattctg 162900  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 54084369 - 54084289
Alignment:
Q  53 tttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagctctatagc 133  Q
    ||||||||||| ||| ||||||||| |||||  |||||| |  || ||||||||||||| |||| |||||||  |||||||    
T  54084369 tttcacaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgctatgcaatagtgctatagc 54084289  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 13427711 - 13427792
Alignment:
Q  50 ctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagctctata 131  Q
    |||||||||||||| ||| |||||||| ||| |   |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  13427711 ctatttcacaatattttgtactaaataatgtgtcatggaacaatagcgatttgttgaaattctgctatgcaatagctctata 13427792  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 9641085 - 9641168
Alignment:
Q  42 tatagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagc 125  Q
    ||||||| ||||||| |||||| |   ||||||||||||||  | ||| ||| |||||||||||||||||| ||| ||||||||    
T  9641085 tatagccgctatttctcaatatttgatactaaatagtgtatcgcagaagaatagcaatttgttcaaattctactatgcaatagc 9641168  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 11530098 - 11530029
Alignment:
Q  41 ctatagcctctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaatt 110  Q
    |||||||| ||||||||||||||  || ||||||||||||||  | ||||||| |  |||||||||||||    
T  11530098 ctatagccgctatttcacaatattatgtactaaatagtgtatcgcagaacaatagtgatttgttcaaatt 11530029  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 17442970 - 17443031
Alignment:
Q  50 ctatttcacaatatcttggactaaatagtgtatttcggaacaattgcaatttgttcaaattc 111  Q
    ||||||||||| || ||| ||||||||  ||| ||| ||||||| |||||||||||||||||    
T  17442970 ctatttcacaacattttgcactaaatatcgtaattctgaacaatagcaatttgttcaaattc 17443031  T

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