View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_19 (Length: 416)
Name: NF6625_low_19
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 5140042 - 5140423
Alignment:
| Q |
18 |
atagtcaacaagaagcttcttacaaaccttccaatggcaagatgttaactttaagaagattgtagagnnnnnnnnagtcctttctaatactttatgatgt |
117 |
Q |
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| T |
5140042 |
atagtcaacaagaagcttcctacaaaccttccaatggcaagatgttaactttaagaagattgtagagttttttt-agtcctttctaatactttatgatgt |
5140140 |
T |
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| Q |
118 |
ttttta---taatatgttggtcaacaagggaccttcttgaatatcgtcttgagtacaatatgattggcaaataagagatgcttgtgttggtataagattt |
214 |
Q |
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| T |
5140141 |
tttttagtataatatgttggtcaacaagggaccttcttgaatatcgtcttgagtacaatatgattggcaaataagagatgcttgtgttggtataagattt |
5140240 |
T |
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| Q |
215 |
gtgtcaatttaagcattcctc-aatcgtgatgtgaaccttgagatggtttgcgcgtagtatgtatacataattttctttgaagtttgtacatgtgttttg |
313 |
Q |
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| T |
5140241 |
gtgtcaatttaagcattcctcaaatcgtgatgtgatccttgagatggtttgcgcgtagtatgtatacataattttctttgaag-ttgtacatgtg----- |
5140334 |
T |
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| Q |
314 |
aatcttttgattgcaataatactttatttcactttattatatgggggaggaatcgtcatttttactcccactatatatttgggttgttctgtg |
406 |
Q |
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| T |
5140335 |
----ttttgatttcaataataatttatttcactttattatatgggggaggaatcgtcatttttactcccactatatatttgggttgttttgtg |
5140423 |
T |
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