View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_21 (Length: 401)
Name: NF6625_low_21
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 6286459 - 6286082
Alignment:
| Q |
20 |
gcttttaatttggtacacgtgcttctctggccaacacgatgatctaaatgttcacacctaaaggagggtgaaatttctgagttacgttgtacnnnnnnn- |
118 |
Q |
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| T |
6286459 |
gcttttaatttggtacatgtgcttctctggccaacacgatgatctaaatgttcacacctaaaggagggtgaaatttctgagttacgttgtactttttttt |
6286360 |
T |
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| Q |
119 |
gggcatgagatttgtcatgtacgtaggagcttttttacattaaaaatatacattatattat---ggtatttgaacagtacaacttatacaagcaaaccaa |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6286359 |
gggcatgagatttgtcatgtacgtaggagctttattacattaaaaatatacattatattattatggtatttgaacagtacaacttatacaagcaaaccaa |
6286260 |
T |
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| Q |
216 |
attggtgtgtatgtatacaatgattgaactatttgagccattcataaatttaagaaagcaaaaatacttggtcttaatcattacgtcatcccataaataa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6286259 |
attggtgtgtatgtatacaatgattgaactatttgagccattcataaatttaagaaagcaaaaatacttggtcttaatcattacgtcatcccatagataa |
6286160 |
T |
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| Q |
316 |
actaactttcaagaaattgagtggataagggaaacgaaattaatgagatgtaggtgttcttatcttataatctctgct |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6286159 |
actaactttcaagaaattgagtggataagggaaacgaaattgatgagatgtaggtgttcttatcttataatctctgct |
6286082 |
T |
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