View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_24 (Length: 388)
Name: NF6625_low_24
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 31939168 - 31938809
Alignment:
| Q |
13 |
aatatggttagaaagattgctaaatgtagaatactaaagtagttatagtttgagattagttagtaacattttctatctttcattataannnnnnnnnncc |
112 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |
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| T |
31939168 |
aatatggttagaaagattgctaaatgtagaagactaaagtagttatagtttgagattagttagtgacatattctatctttcattataattttttttt-cc |
31939070 |
T |
|
| Q |
113 |
attattatgtatagcatgacactcaatagtt-ccatctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggat |
211 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31939069 |
attattatgtatagcatgacactcaatagtttccatctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggat |
31938970 |
T |
|
| Q |
212 |
acacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccattctttagatgtagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938969 |
acacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccattctttagatgtagt |
31938870 |
T |
|
| Q |
312 |
tgatgataatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatct |
372 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938869 |
tgatgatgatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatct |
31938809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 152 - 343
Target Start/End: Complemental strand, 13535667 - 13535476
Alignment:
| Q |
152 |
aatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacattaggtttagcaattctaggactctctgatgacag |
251 |
Q |
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| T |
13535667 |
aatgcaggtatactcaagttggaaatgcggtcgctgttccggtagcccttgcccttggatacacattaggtttggctattctaggactttctgatgacaa |
13535568 |
T |
|
| Q |
252 |
tcctttgacaattctcccctttaagtacccaagttgtctagcccattctttagatgtagttgatgataatggctcaagctgagcttgtcctc |
343 |
Q |
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|||||||||| |||||| |||||||||||||||||||| |||| |||||||||| |||||||||| ||| ||||| ||||||||||||| |
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| T |
13535567 |
gcctttgacaactctcccatttaagtacccaagttgtcttgccccttctttagatacagttgatgatgatgattcaagttgagcttgtcctc |
13535476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 370
Target Start/End: Complemental strand, 9389520 - 9389167
Alignment:
| Q |
15 |
tatggttagaaagattgctaaatgtagaatactaaagtagttatagtttgagattagttagtaacattttctatctttcattataannnnnnnnnn--cc |
112 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||| || |
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| T |
9389520 |
tatggttagaaagattgctaaatgtagaagactaaactagttataagt-gagattagttagtaacattttctatctttcattatatttttttttcttccc |
9389422 |
T |
|
| Q |
113 |
attattatgtatagcatgacactcaatagttccatctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggata |
212 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9389421 |
attattatgtattgcatggcactcaatagtttcatctttaatgcaggtacatgcaagttggaaacgcagttgctgttcctgtggcccttgcccttggata |
9389322 |
T |
|
| Q |
213 |
cacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccattctttagatgtagtt |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
9389321 |
cacattaggtttagcaattctaggactctctgatgacagtcctttgacaactctcccctttaagtacccaagttgtctggcccgttctttagatgtagtt |
9389222 |
T |
|
| Q |
313 |
gatgataatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttat |
370 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9389221 |
gatg---atggctcaagctgagcttgtcctcattaatccatgtcttttccaccgttat |
9389167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 19810099 - 19810251
Alignment:
| Q |
167 |
aagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacattaggtttagca-attctaggactctctgatgacagtcctttgacaattc |
265 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||||||| ||| ||| |||||||||| ||||| |||| |||||||| ||| |||| | ||||| | || |
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| T |
19810099 |
aagttggaaatgcggttactgttccaatggcccttgacctcggacacacattaggattagcctattcaaggactctttgacgacaagtcgttgacgactc |
19810198 |
T |
|
| Q |
266 |
tcccctttaagtacccaagttgtctagcccattctttagatgtagttgatgat |
318 |
Q |
| |
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||| |||||||| ||| | |||||||||| | |||||| ||||||||||||| |
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| T |
19810199 |
tcctgtttaagtagccatgctgtctagcccgtcctttagctgtagttgatgat |
19810251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 1337342 - 1336978
Alignment:
| Q |
13 |
aatatggttagaaagattgctaaatgtagaatactaaagtagttatagtttgagattagttagtaacattttctatctttcattataannnnnnnnnn-- |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
1337342 |
aatatggttagaaagattgctaaatgtagaagactaaagtagttatagtttgagtttagtcagtaacattttctatctttg--tataactttttgtcttc |
1337245 |
T |
|
| Q |
111 |
---ccattattatgtatagcatgacactcaatagttccatctttaatg--caggtatattcaagttggaaacgcagttgctgttcctgtggcccttgccc |
205 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||| |
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| T |
1337244 |
tttccattattatgtatagcatggcactcaatagttccatctttaatgtgcaggtacatgcaagttggaaacgcagttgctgttcctgttgcccttgccc |
1337145 |
T |
|
| Q |
206 |
ttggatacacattaggtttagcaattctaggactctctgatgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccattctttaga |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||| | ||||||| |
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|
| T |
1337144 |
ttggatacacattaggtttggcaattctaggacactccgatgacggtcctttgacaactctcccctttaagtaccctagttgtctagcccgtcctttaga |
1337045 |
T |
|
| Q |
306 |
tgtagttgatgataatggctcaagctgagcttgtcctcattcatccatgtcttttccaccgttatct |
372 |
Q |
| |
|
||||||| ||||| |||| ||||| ||| |||||||||||| |||||||||||||| |||||||||| |
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|
| T |
1337044 |
tgtagttaatgatgatggttcaagttgatcttgtcctcattaatccatgtcttttcaaccgttatct |
1336978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 146 - 372
Target Start/End: Complemental strand, 5639295 - 5639069
Alignment:
| Q |
146 |
atctttaatgcaggtatattcaagttggaaacgcagttgctgttcctgtggcccttgcccttggatacacattaggtttagcaattctaggactctctga |
245 |
Q |
| |
|
|||||||||||||||| || ||||||||||| || |||||||||||||||| |||||||| ||||||||||| ||||||||| ||| ||||| ||||| |
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| T |
5639295 |
atctttaatgcaggtacatacaagttggaaatgcggttgctgttcctgtgggtcttgccctcggatacacattgggtttagcacttcaaggacgctctgg |
5639196 |
T |
|
| Q |
246 |
tgacagtcctttgacaattctcccctttaagtacccaagttgtctagcccattctttagatgtagttgatgataatggctcaagctgagcttgtcctcat |
345 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||||||||||| |||| | |||||| ||||||||||||| |||| ||||| ||||||||||||| | |
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|
| T |
5639195 |
ggacaatcctttgacaactctcccctttaagtatccaagttgtcttgcccgtcctttagctgtagttgatgatgatggttcaagttgagcttgtcctcgt |
5639096 |
T |
|
| Q |
346 |
tcatccatgtcttttccaccgttatct |
372 |
Q |
| |
|
| || ||||||||||||| ||||||| |
|
|
| T |
5639095 |
taattcatgtcttttccattgttatct |
5639069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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