View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_25 (Length: 387)
Name: NF6625_low_25
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 44022916 - 44022553
Alignment:
| Q |
20 |
cactcctcacgttaacttaatttggatttttcatatcataatatacatagcgaaagttcaaaaagttctcacnnnnnnnnnnnnnntcttcaaatagtac |
119 |
Q |
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| T |
44022916 |
cactcctcacgttaacttaatttggatttttcatatcataata--catagcgaaagttcaaaaagttctcacaaaaaaaataaaaatgttcaaatagtac |
44022819 |
T |
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| Q |
120 |
gtactttactttacgtggactctcttaacataataagggaacaaattgtgcaaattattggtaagtatcacatcatcattatcgttattattaat---ac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44022818 |
gtactttactttacgtggactctcttaacataataagggaacaaattgtgcaaattattggtaagtatcacatcatcattatcgttattattaatactac |
44022719 |
T |
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| Q |
217 |
tatcctatgttgatttgtattattcttgagactatcaaatgaagnnnnnnnnncataagctataatatcataatcaatcaacaccagtgacctgcacatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44022718 |
tatcctatgttgatttgtattattcttgagactatcaaatgaa-aaaaaaaatcataagctataatatcataatcaatcaacaccagtgacctgcacatt |
44022620 |
T |
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| Q |
317 |
atggcttaactcggttgcaaaatacgtgttgcattttggtgatattaatgacatttttcttctcact |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44022619 |
atggcttaactcggttgcaaaatacgtgttgcattttggtgatattaatgacatttttcttctcact |
44022553 |
T |
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