View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_26 (Length: 381)

Name: NF6625_low_26
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_26
NF6625_low_26
[»] chr6 (7 HSPs)
chr6 (7-373)||(2548244-2548610)
chr6 (89-139)||(2670979-2671029)
chr6 (268-301)||(24836308-24836341)
chr6 (269-301)||(5554874-5554906)
chr6 (269-301)||(32843424-32843456)
chr6 (269-297)||(32975907-32975935)
chr6 (269-297)||(33116534-33116562)
[»] chr2 (3 HSPs)
chr2 (240-301)||(10150657-10150716)
chr2 (269-301)||(9478228-9478260)
chr2 (269-301)||(13864579-13864611)
[»] chr4 (2 HSPs)
chr4 (265-301)||(24936235-24936271)
chr4 (269-300)||(27321941-27321972)
[»] chr8 (2 HSPs)
chr8 (271-301)||(9928187-9928217)
chr8 (269-301)||(1433474-1433506)
[»] chr7 (7 HSPs)
chr7 (271-300)||(25507282-25507311)
chr7 (271-300)||(25558299-25558328)
chr7 (271-300)||(25558497-25558526)
chr7 (269-302)||(27389312-27389345)
chr7 (268-301)||(27481403-27481436)
chr7 (269-301)||(1431417-1431449)
chr7 (269-301)||(44241789-44241821)
[»] chr5 (2 HSPs)
chr5 (271-300)||(10907310-10907339)
chr5 (269-301)||(35135771-35135803)
[»] chr3 (3 HSPs)
chr3 (272-301)||(24605125-24605154)
chr3 (272-300)||(1809945-1809973)
chr3 (269-301)||(24158611-24158643)
[»] chr1 (2 HSPs)
chr1 (269-302)||(52190067-52190100)
chr1 (269-301)||(26679203-26679235)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 2548610 - 2548244
Alignment:
Q  7 tagataatacttaaggttgcacaataaagaaaagatgggaatgagctcttatttgaagactttgttaccgatcacttcctacataagcacttttttccat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2548610 tagataatacttaaggttgcacaataaagaaaagatgggaatgagctcttatttgaagactttgttaccaatcacttcctacataagcacttttttccat 2548511  T
Q  107 acttaggtcatggctagcttcaaaatatatattgaaatctagtgaaatctcttaagaagtagcttcaatcctcaaggacttatgacataagcacttatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2548510 acttaggtcatggctagcttcaaaatatatattgaaatctagtgaaatctcttaagaagtagcttcaatcctcaaggacttatgacataagcacttatat 2548411  T
Q  207 tactatctattagtatactattttgattgtgtcgataaataacttaattaaacgtttattatatataagtgtttatgtataagttatttctataaatttg 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2548410 tactatctattagtatactattttgattgtgtggataaataacttaattaaacgtttattatatataagtgtttatgtataagttatttctataaatttg 2548311  T
Q  307 ttttagaagctattctattatgtggagaacttgtcaaaaaatgtctcaaacaatattatgaatgttt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2548310 ttttagaagctattctattatgtggagaacttgtcaaaaaatgtctcaaacaatattatgaatgttt 2548244  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 2671029 - 2670979
Alignment:
Q  89 ataagcacttttttccatacttaggtcatggctagcttcaaaatatatatt 139  Q
    |||| |||||||| |||| ||||||||||| ||| ||||||||||||||||    
T  2671029 ataaacactttttgccatgcttaggtcatgactatcttcaaaatatatatt 2670979  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 24836341 - 24836308
Alignment:
Q  268 tatataagtgtttatgtataagttatttctataa 301  Q
    ||||||||| ||||||||||||||||||||||||    
T  24836341 tatataagtatttatgtataagttatttctataa 24836308  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 5554906 - 5554874
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    ||||| |||||||||||||||||||||||||||    
T  5554906 atatacgtgtttatgtataagttatttctataa 5554874  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 32843456 - 32843424
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    ||||||||| |||||||||||||||||||||||    
T  32843456 atataagtgcttatgtataagttatttctataa 32843424  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 32975907 - 32975935
Alignment:
Q  269 atataagtgtttatgtataagttatttct 297  Q
    |||||||||||||||||||||||||||||    
T  32975907 atataagtgtttatgtataagttatttct 32975935  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 33116534 - 33116562
Alignment:
Q  269 atataagtgtttatgtataagttatttct 297  Q
    |||||||||||||||||||||||||||||    
T  33116534 atataagtgtttatgtataagttatttct 33116562  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 10150657 - 10150716
Alignment:
Q  240 gataaataacttaattaaacgtttattatatataagtgtttatgtataagttatttctataa 301  Q
    |||||| ||||||||||| |  ||||||||  ||||||||||||||||||||||||||||||    
T  10150657 gataaacaacttaattaagcacttattata--taagtgtttatgtataagttatttctataa 10150716  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 9478228 - 9478260
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    ||||||||||||||||||||| |||||||||||    
T  9478228 atataagtgtttatgtataagctatttctataa 9478260  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 13864579 - 13864611
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    ||||||||||||||||||||| |||||||||||    
T  13864579 atataagtgtttatgtataagctatttctataa 13864611  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 24936235 - 24936271
Alignment:
Q  265 ttatatataagtgtttatgtataagttatttctataa 301  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24936235 ttatatataagtggttatgtataagttatttctataa 24936271  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 27321972 - 27321941
Alignment:
Q  269 atataagtgtttatgtataagttatttctata 300  Q
    ||||||||||||||||||||||||||||||||    
T  27321972 atataagtgtttatgtataagttatttctata 27321941  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 301
Target Start/End: Original strand, 9928187 - 9928217
Alignment:
Q  271 ataagtgtttatgtataagttatttctataa 301  Q
    |||||||||||||||||||||||||||||||    
T  9928187 ataagtgtttatgtataagttatttctataa 9928217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 1433474 - 1433506
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    ||||||||| |||||||||||||||||||||||    
T  1433474 atataagtggttatgtataagttatttctataa 1433506  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 25507282 - 25507311
Alignment:
Q  271 ataagtgtttatgtataagttatttctata 300  Q
    ||||||||||||||||||||||||||||||    
T  25507282 ataagtgtttatgtataagttatttctata 25507311  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 25558328 - 25558299
Alignment:
Q  271 ataagtgtttatgtataagttatttctata 300  Q
    ||||||||||||||||||||||||||||||    
T  25558328 ataagtgtttatgtataagttatttctata 25558299  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 25558526 - 25558497
Alignment:
Q  271 ataagtgtttatgtataagttatttctata 300  Q
    ||||||||||||||||||||||||||||||    
T  25558526 ataagtgtttatgtataagttatttctata 25558497  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 27389312 - 27389345
Alignment:
Q  269 atataagtgtttatgtataagttatttctataaa 302  Q
    ||||||||||||||||||||| ||||||||||||    
T  27389312 atataagtgtttatgtataagctatttctataaa 27389345  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 27481436 - 27481403
Alignment:
Q  268 tatataagtgtttatgtataagttatttctataa 301  Q
    |||||||||||||||||||||| |||||||||||    
T  27481436 tatataagtgtttatgtataagctatttctataa 27481403  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 1431449 - 1431417
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    |||||||||||||||||||||||||||| ||||    
T  1431449 atataagtgtttatgtataagttatttccataa 1431417  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 44241789 - 44241821
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    |||||||||| ||||||||||||||||||||||    
T  44241789 atataagtgtgtatgtataagttatttctataa 44241821  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 10907310 - 10907339
Alignment:
Q  271 ataagtgtttatgtataagttatttctata 300  Q
    ||||||||||||||||||||||||||||||    
T  10907310 ataagtgtttatgtataagttatttctata 10907339  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 35135803 - 35135771
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    ||||||||||||||||||||| |||||||||||    
T  35135803 atataagtgtttatgtataagatatttctataa 35135771  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 301
Target Start/End: Complemental strand, 24605154 - 24605125
Alignment:
Q  272 taagtgtttatgtataagttatttctataa 301  Q
    ||||||||||||||||||||||||||||||    
T  24605154 taagtgtttatgtataagttatttctataa 24605125  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Original strand, 1809945 - 1809973
Alignment:
Q  272 taagtgtttatgtataagttatttctata 300  Q
    |||||||||||||||||||||||||||||    
T  1809945 taagtgtttatgtataagttatttctata 1809973  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 24158643 - 24158611
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    ||||||||| |||||||||||||||||||||||    
T  24158643 atataagtgcttatgtataagttatttctataa 24158611  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 52190067 - 52190100
Alignment:
Q  269 atataagtgtttatgtataagttatttctataaa 302  Q
    ||||||||||||||||||||||| ||||||||||    
T  52190067 atataagtgtttatgtataagttttttctataaa 52190100  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 26679203 - 26679235
Alignment:
Q  269 atataagtgtttatgtataagttatttctataa 301  Q
    |||||||||||||||| ||||||||||||||||    
T  26679203 atataagtgtttatgtgtaagttatttctataa 26679235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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