View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6625_low_27 (Length: 380)
Name: NF6625_low_27
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 8727564 - 8727215
Alignment:
| Q |
16 |
atgtcttaattaaacacgctaaagttcacctcttaattaatcaccgaactagaacaatggacttttctggtttcacttatgttactgctgtatagttcta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8727564 |
atgtcttaattaaacacgctaaagttcacctcttaattaatcaccgaactagaacaatggacttttctgatttcacttatgttactgctgtatagttcta |
8727465 |
T |
|
| Q |
116 |
gctggttaaaaattacagtatcgttctttaannnnnnnngtttcttgtagtttatatctcaaaatttgatgcaaccacggactaagaataaagtggtcaa |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8727464 |
gctggttaaaaattacagtatctttctttaattttttttgtttcttgtagtttatatctcaaaatttgatgcaaccacggactaagagtaaagtggtcaa |
8727365 |
T |
|
| Q |
216 |
tcattttctaatgaattacccattatagt-gaaaaaactcctttacaaaccgaaaaattaactaactaattacggcnnnnnnncctaattactaataaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8727364 |
tcattttctaatgaattacccattatagtggaaaaaactcctttacaaaccgaaaaactaactaactaattacggcaaaaaaacctaattactaataaat |
8727265 |
T |
|
| Q |
315 |
tacacttgaggcatgatgcttcattaataacttgcacctttctcgtaagt |
364 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
8727264 |
tacacttgaggcatggtgcttcattaataacttgcacctttctcataagt |
8727215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 8696135 - 8696096
Alignment:
| Q |
307 |
taataaattacacttgaggcatgatgcttcattaataact |
346 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
8696135 |
taataatttacacttgaggcatgatgcttcgttaataact |
8696096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University