View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_29 (Length: 361)
Name: NF6625_low_29
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 6285955 - 6285628
Alignment:
| Q |
18 |
ttaagcttatgttttagcaaataaacaaagttattagtggaatcttttagtctcaattttccgccgttatttcaattgtttatatctgttttttaaagaa |
117 |
Q |
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| T |
6285955 |
ttaagcttatgttttagcaaataaacaaagttattagtggaatcttt-agtctcaattttccgccgttatttcaattgtttatatctgttttttaaagaa |
6285857 |
T |
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| Q |
118 |
aaaattgtgaagcaataaattattaaatgacactaataatcattttaaagttgttctaataaacatttgaactcacgcccccacccaaaaaataccctat |
217 |
Q |
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| T |
6285856 |
aaaattgtgaagcaataaattattaaatgacactaataatcattttaaagttgttctaataaacatttgaacccacgcccccacccaaaaaataccctat |
6285757 |
T |
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| Q |
218 |
attatcatatatgccctatatctattgattatttannnnnnnngacaaaa-cctatatctattgatgaatattnnnnnnngaagtcatcgtgaacagttc |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6285756 |
attatcatatatgccctatatctattgattattta-tttttttgacaaaaccctatatctattgatgaatattaaaaaaagaagtcatcgtgaacagttg |
6285658 |
T |
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| Q |
317 |
agttgacaaagacaatgcataatatacaca |
346 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
6285657 |
agttgacaaaaacaatgcataatatacaca |
6285628 |
T |
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