View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_30 (Length: 354)
Name: NF6625_low_30
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 14516859 - 14516540
Alignment:
| Q |
1 |
aggagcagagataatttctggtgtcaaatttgatcaaataagtggcagttattctgtgcagccggtccacctagcatgcagcaattccatcccatgcaca |
100 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14516859 |
aggaacagtgataatttctggtgtcaaatttgatcaaataagtggcagttatactctgcagccggtccacctagcatgcagcaattccatcccatgcaca |
14516760 |
T |
|
| Q |
101 |
gacgttgatttaactgacattcagttaagaccttcccttagttataggggtatgcaacaagctatgtgttggaactcttatggaaaatcacaaggtcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14516759 |
gacgttgatttaactgacattcagttaagaccttcccttagttataggggaatgcaacaagctatgtgttggaactcttatggaaaatcacaaggtcaat |
14516660 |
T |
|
| Q |
201 |
tagtaccttcaagtattgattattgtttgagaagtggtggtggattaattaagaggatagcaaagtcacatgatagtgtatgttataaaatgttatagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14516659 |
tagtaccttcaagtattgattattgtttgagaagtggtggtggattaattaagaggatagcaaagtcacatgatagtgtatgttataaaatgttatagat |
14516560 |
T |
|
| Q |
301 |
gttatctttggttagttttg |
320 |
Q |
| |
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||||||||| |||||||||| |
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| T |
14516559 |
gttatctttagttagttttg |
14516540 |
T |
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