View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_33 (Length: 320)

Name: NF6625_low_33
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_33
NF6625_low_33
[»] chr4 (1 HSPs)
chr4 (19-314)||(50370445-50370729)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 50370729 - 50370445
Alignment:
Q  19 tgaacatgtttcatattatactaatttgaacggactctaagtatgatttttagattataaaatctgaaaatatcttgactgtagacaatgatttgctcaa 118  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  50370729 tgaacatgtttcatattata-taatttgaacggactctaagcatgatttttagattataaaatccaaaaatatcttgactatagacaatggtttgctcaa 50370631  T
Q  119 caaggttgattgatttcacaaatgtttcatgcattttttaacgggtttgaccacgtattcaaacttacattgtttgtcattataattgatacttgtttgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50370630 caaggttgattgatttcacaaatgtttcatgcattttttaacgggtttgaccaggtattcaaacttacattgtttgtcattataattgatacttgtttgc 50370531  T
Q  219 ttataaaatagccactcattatttacaattattcattctaactcattttctctcatttcctagtcttatttccatctgcttaacattgatgatgtc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| ||||||||    
T  50370530 ttataaaatagccactcattatttacaattattcattctaactcatttt----------ctagtcttatttccatctgcttaacatttatgatgtc 50370445  T

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