View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_34 (Length: 319)
Name: NF6625_low_34
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_34 |
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| [»] chr4 (14 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 319
Target Start/End: Complemental strand, 4007959 - 4007643
Alignment:
| Q |
3 |
atgattgttgatctctctccaaatcatctcccccatttgttgggctttgttttttgtttcggatttgctgaggactaccaacattgtgaacaaattgagt |
102 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |
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| T |
4007959 |
atgattgttgatctctttccaaatcatctcccccctttgttgggctttgttttttgcttcatccttgctgaggattaccaacattgtgaacaaattgagt |
4007860 |
T |
|
| Q |
103 |
tcaacatcactacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatgtataggacggctctcggtattgcatcagatcatgtgtg |
202 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
4007859 |
tcaacatcagtacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatgaataggacacctctcggtattgcatcagatcatgtgtg |
4007760 |
T |
|
| Q |
203 |
catgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaaggacagatacgaatgta |
302 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4007759 |
catgatacacgaccaacgatgttctcggtacctaactagagtagcaaagaatcatacaaggtttaaaatcaaggttacagcaaggacagatacgaatgta |
4007660 |
T |
|
| Q |
303 |
aagcttagagaaagacc |
319 |
Q |
| |
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||||||||||||||||| |
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| T |
4007659 |
aagcttagagaaagacc |
4007643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 67 - 319
Target Start/End: Complemental strand, 3998904 - 3998652
Alignment:
| Q |
67 |
ttgctgaggactaccaacattgtgaacaaattgagttcaacatcactacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatgta |
166 |
Q |
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| T |
3998904 |
ttgctgaggactaccaacattgtgcacaaattgagttcaacatcactacaattgatgacaaggatgatgatgaaaaggacggtgtcagtatttacatgaa |
3998805 |
T |
|
| Q |
167 |
taggacggctctcggtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggttt |
266 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||| |
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| T |
3998804 |
taggacacctctcagtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagtgtagcaaagaatcatacaaggttt |
3998705 |
T |
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| Q |
267 |
aaaatcaaggttacagcaaggacagatacgaatgtaaagcttagagaaagacc |
319 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3998704 |
aaaattaaggttacagcaaggacagatacgaatgtaaagcttagagaaagacc |
3998652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 4023118 - 4022828
Alignment:
| Q |
2 |
catgattgttgatctctctccaaatcatctcccccatttgttgggctttgttttttgtttcggatttgctgaggactaccaacattgtgaacaaattgag |
101 |
Q |
| |
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|||||||||||||||||||||| || ||||| ||| |||| |||||||||||||||| || | ||||| ||||| ||| ||||||| | |||||| |
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| T |
4023118 |
catgattgttgatctctctccacattatctctcccctttgctgggctttgttttttgctttgtccttgctaaggacatccattattgtgaccgaattgaa |
4023019 |
T |
|
| Q |
102 |
ttcaacatcactacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatgtataggacggctctcggtattgcatcagatcatgtgt |
201 |
Q |
| |
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|| ||||||||||||| ||||| | | ||| |||||||||| ||| |||| ||| |||||| |||| || |||||||||||||||||||||||||| |
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| T |
4023018 |
ttgaacatcactacaaatgatgctgaaggtgacgatgaaaagggtggcgtcaatatatacatggatagaacacgtctcggtattgcatcagatcatgtgt |
4022919 |
T |
|
| Q |
202 |
gcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaaggacaga |
292 |
Q |
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| T |
4022918 |
gcatgatatacgaccaaccattttctcactacctaactagcatagcaaacaataagagaaggtttaaaatcaaggttacggcaaggacaga |
4022828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 290
Target Start/End: Original strand, 3957614 - 3957866
Alignment:
| Q |
38 |
tttgttgggctttgttttttgtttcggatttgctgaggactaccaacattgtgaacaaattgagttcaacatcactacaattgatgacaaggatgatgat |
137 |
Q |
| |
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||||||||||||||||||||| | | |||| |||||| |||| |||| | |||||||| || || |||||||||||||||| ||||||||| |
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| T |
3957614 |
tttgttgggctttgttttttgctccatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaa |
3957713 |
T |
|
| Q |
138 |
gaaaaggatggtgtcagtatttacatgtataggacggctctcggtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaa |
237 |
Q |
| |
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|||||||||||||||||||| | |||||||||| | || || | ||||||||||| ||||||||| || ||| || |||||| || ||||||| |
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| T |
3957714 |
gaaaaggatggtgtcagtatcttcatgtataggtattttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcacgctacctaa |
3957813 |
T |
|
| Q |
238 |
ctagagtagcaaataattagacaaggtttaaaatcaaggttacagcaaggaca |
290 |
Q |
| |
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|||| ||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
3957814 |
ctagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggaca |
3957866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 3815533 - 3815439
Alignment:
| Q |
191 |
agatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaa |
285 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||| |||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
3815533 |
agatcatgtatgcatgatacaggaccaacgatgttctgggtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaa |
3815439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 3922307 - 3922410
Alignment:
| Q |
187 |
catcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaag |
286 |
Q |
| |
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|||||||||||||||| ||||| || |||||| ||||||| | ||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||| | |
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| T |
3922307 |
catcagatcatgtgtgtatgatttacgaccaaccttgttctcagcacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcatg |
3922406 |
T |
|
| Q |
287 |
gaca |
290 |
Q |
| |
|
|||| |
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| T |
3922407 |
gaca |
3922410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 3935668 - 3935767
Alignment:
| Q |
188 |
atcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaagg |
287 |
Q |
| |
|
||||||||||||||| ||||| || |||||| || |||| ||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
3935668 |
atcagatcatgtgtgtatgatttacgaccaaccttgctctcagtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaagg |
3935767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 3985041 - 3984754
Alignment:
| Q |
3 |
atgattgttgatctctctccaaatcatctcccccatttgttgggctttgttttttgtttcggatttgctgaggactaccaacattgtgaacaaattgagt |
102 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||| |||||||||||||||||| || ||| |||| ||||||| | || |||| || || || | |
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| T |
3985041 |
atgattgttgatctctcaccacctcatctctcccctttgttgggctttgttttctgcttcatccttgccgaggactccaaatattgcgacattatggaat |
3984942 |
T |
|
| Q |
103 |
tcaacatcactacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatgtataggacggctctcggtattgcatcagatcatgtgtg |
202 |
Q |
| |
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| |||||| ||||| |||||| ||| ||| | |||||| ||||||||| ||| |||||||||||||| | | || || || |||||||||||| |
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| T |
3984941 |
ttaacatctctacatttgatggtgagggtgacggtgaaaaagatggtgtcgatatctacatgtataggacatgttgctatactgaattagatcatgtgtg |
3984842 |
T |
|
| Q |
203 |
catgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaaggaca |
290 |
Q |
| |
|
||||||| || |||||| |||||||| |||||||| || |||| || | | ||||| | |||||||||||||||||||||||||| |
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| T |
3984841 |
catgatatacgaccaaccatgttctcactacctaaccagcatagccaaaagtcagacacaggttaaaatcaaggttacagcaaggaca |
3984754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 3999976 - 3999875
Alignment:
| Q |
189 |
tcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaagga |
288 |
Q |
| |
|
|||||||||||||| |||||| || ||| || || ||||| ||||||||||||| |||| || ||| | |||||||| |||||||||||| ||||||||| |
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| T |
3999976 |
tcagatcatgtgtgtatgatatacgacccaccattttctcagtacctaactagaatagcgaaaaatcatacaaggttcaaaatcaaggttgcagcaagga |
3999877 |
T |
|
| Q |
289 |
ca |
290 |
Q |
| |
|
|| |
|
|
| T |
3999876 |
ca |
3999875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3922118 - 3922175
Alignment:
| Q |
1 |
gcatgattgttgatctctctccaaatcatctcccccatttgttgggctttgttttttg |
58 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| |
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| T |
3922118 |
gcatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttg |
3922175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3935479 - 3935535
Alignment:
| Q |
2 |
catgattgttgatctctctccaaatcatctcccccatttgttgggctttgttttttg |
58 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
3935479 |
catgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttg |
3935535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 3807947 - 3807848
Alignment:
| Q |
188 |
atcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagagtagcaaataattagacaaggtttaaaatcaaggttacagcaagg |
287 |
Q |
| |
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||||||||||||| ||||| || || | ||||||||||||| | | |||||| | |||||| ||| || |||||||||||||||||||||||| |||| |
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| T |
3807947 |
atcagatcatgtgagcatggtatacgatcaacaatgttctcaattcttaactaaaaaagcaaaaaatcaggcaaggtttaaaatcaaggttacagtaagg |
3807848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 4000163 - 4000001
Alignment:
| Q |
2 |
catgattgttgatctctctccaaatcatctcccccatttgttgggctttgttttttgtttcggatttgctgaggactaccaacattgtgaacaaattgag |
101 |
Q |
| |
|
|||||||||| || |||||||| ||||||| || ||||||||||||||||||||| || | ||||| ||| || | | ||||| | |||||| |
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| T |
4000163 |
catgattgttaatatctctccacttcatctctcctctttgttgggctttgttttttgctttgtccttgctaaggtctccaattattgttacaaaattgta |
4000064 |
T |
|
| Q |
102 |
ttcaacatcactacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatg |
164 |
Q |
| |
|
|| ||||||||| ||||||||| ||| ||||| |||||||||||||||| ||| |||||| |
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|
| T |
4000063 |
ttgaacatcactgcaattgatgttgagggtgatggtgaaaaggatggtgtcgatatatacatg |
4000001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 3808139 - 3808086
Alignment:
| Q |
5 |
gattgttgatctctctccaaatcatctcccccatttgttgggctttgttttttg |
58 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||| |||||||||||||||||||| |
|
|
| T |
3808139 |
gattgttgatctctctccacctcacctctcccccttgttgggctttgttttttg |
3808086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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