View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_35 (Length: 312)
Name: NF6625_low_35
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 37961335 - 37961621
Alignment:
| Q |
17 |
aatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatg |
116 |
Q |
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| T |
37961335 |
aatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatg |
37961434 |
T |
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| Q |
117 |
atgagttggatgaggaaaatggtagaagaagatacgttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgat |
216 |
Q |
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| T |
37961435 |
atgagttggatgaggaaaatggtagaagaagatacgttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgat |
37961534 |
T |
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| Q |
217 |
gtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcatggtgaacttggtctcgtgagttatgtttgtgtctgtg |
303 |
Q |
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| T |
37961535 |
gtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcatggtgaacttggtctcgtgagttatgtttgtgtttgtg |
37961621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 37906733 - 37906481
Alignment:
| Q |
17 |
aatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatg |
116 |
Q |
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| T |
37906733 |
aatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtg |
37906634 |
T |
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| Q |
117 |
atgagttggatgaggaaaatggtagaagaagatacgttgaa---ttgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggt |
213 |
Q |
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| T |
37906633 |
atgagttgggtgaggaaagtggtagaagaagatacgtttaacagtgggttgacagtaaaaccatgaaatgtcgaagaaggtgagagggagtgttgttggt |
37906534 |
T |
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| Q |
214 |
gatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
266 |
Q |
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| T |
37906533 |
gatggaagtgaatttggtggtggtgcaacttggctatgttctattaccttcat |
37906481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 37914896 - 37914644
Alignment:
| Q |
17 |
aatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatg |
116 |
Q |
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| T |
37914896 |
aatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtg |
37914797 |
T |
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| Q |
117 |
atgagttggatgaggaaaatggtagaagaagatacgttgaattggg---tgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggt |
213 |
Q |
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| T |
37914796 |
atgagttgggtgaggaaagtggtagaagaagatgcgtttaagggggggtttgcagtaaaaccaagaaatgtcaaagaaagtgagagggattctcgttggt |
37914697 |
T |
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| Q |
214 |
gatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
266 |
Q |
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| T |
37914696 |
gatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcat |
37914644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 3782967 - 3782807
Alignment:
| Q |
52 |
aagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatac |
151 |
Q |
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| T |
3782967 |
aagaagtgttcgagggtgatggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggtagaagaagatgc |
3782868 |
T |
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| Q |
152 |
gttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttgg |
212 |
Q |
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| T |
3782867 |
gtttaatggttcgacagcaaaaccatggaatgtccaagaatgtgaggggaagaatggttgg |
3782807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 4957761 - 4957855
Alignment:
| Q |
37 |
ttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgagg |
131 |
Q |
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| T |
4957761 |
ttagaggagaaagggaagaaatgttggagagtgagggaaagagagtttttgagaattggtagtgaagtttgaaggaagtgttgtgttgaatgagg |
4957855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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