View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_38 (Length: 298)

Name: NF6625_low_38
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_38
NF6625_low_38
[»] chr7 (1 HSPs)
chr7 (1-293)||(34880091-34880383)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 34880383 - 34880091
Alignment:
Q  1 tcaagaaggacgcacacgactgcctcattgctatttggttgacttgcacttgaaatacctggttggaacataataacaggtttttcattcacaaagaaca 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34880383 tcaagaaggacgcacacgactgcttcattgctatttggttgacttgcacttgaaatacttggttggaacataataacaggtttttcattcacaaagaaca 34880284  T
Q  101 atctcaagatcaaatcatggaacaagtcaaaaatcaagtttgggggtggatcaaggttaattttcaaaacttcacatatgatctgaatcatttgtggttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34880283 atctcaagatcaaatcatggaacaagtcaaaaatcaagtttgggggtggatcaaggttaattttcaaaacttcacatatgatctgaatcatttgtggttc 34880184  T
Q  201 aatcagttagattatcatagtttctcatctcctttataatatcttatttgtaatatttccttannnnnnncttgctccattgcctatgctact 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||| ||||    
T  34880183 aatcagttagattatcatagtttctcatctcctttataatatcttatttgtaatatttccttatttttttcttgctccattgcttatgttact 34880091  T

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