View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_40 (Length: 289)

Name: NF6625_low_40
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_40
NF6625_low_40
[»] chr8 (22 HSPs)
chr8 (13-289)||(32665774-32666050)
chr8 (13-289)||(9081083-9081358)
chr8 (104-223)||(9710217-9710336)
chr8 (101-223)||(34687752-34687874)
chr8 (96-240)||(18548531-18548676)
chr8 (104-254)||(34439484-34439635)
chr8 (123-240)||(7644799-7644917)
chr8 (104-215)||(18935054-18935165)
chr8 (107-240)||(18935323-18935457)
chr8 (123-223)||(7645076-7645176)
chr8 (101-223)||(7535546-7535668)
chr8 (104-240)||(4623070-4623207)
chr8 (104-240)||(16049481-16049618)
chr8 (124-221)||(25879588-25879685)
chr8 (96-215)||(16049780-16049897)
chr8 (159-223)||(18429616-18429680)
chr8 (104-172)||(21445986-21446054)
chr8 (120-216)||(34439239-34439335)
chr8 (104-165)||(7535301-7535362)
chr8 (162-240)||(25879829-25879908)
chr8 (104-210)||(4623406-4623512)
chr8 (197-270)||(7535356-7535430)
[»] chr2 (22 HSPs)
chr2 (13-289)||(6412374-6412650)
chr2 (123-240)||(15988524-15988641)
chr2 (120-240)||(13490191-13490312)
chr2 (104-247)||(27956726-27956870)
chr2 (123-246)||(29526862-29526986)
chr2 (101-284)||(24284030-24284214)
chr2 (96-223)||(32622481-32622608)
chr2 (123-288)||(44995288-44995452)
chr2 (123-213)||(13140310-13140400)
chr2 (106-223)||(26845473-26845591)
chr2 (123-240)||(14473804-14473922)
chr2 (102-215)||(6795472-6795585)
chr2 (166-263)||(14473540-14473638)
chr2 (104-186)||(39060309-39060391)
chr2 (123-215)||(1352852-1352944)
chr2 (103-171)||(1353147-1353215)
chr2 (13-53)||(33203135-33203175)
chr2 (120-223)||(27957013-27957116)
chr2 (104-174)||(14473507-14473577)
chr2 (104-240)||(3217286-3217423)
chr2 (123-247)||(24015831-24015956)
chr2 (159-263)||(38262783-38262888)
[»] chr4 (30 HSPs)
chr4 (96-240)||(4416752-4416897)
chr4 (106-284)||(4592586-4592765)
chr4 (123-289)||(54702215-54702383)
chr4 (104-247)||(45505327-45505471)
chr4 (104-254)||(37724440-37724591)
chr4 (104-240)||(11306528-11306665)
chr4 (104-240)||(48845713-48845850)
chr4 (104-240)||(49983794-49983931)
chr4 (123-247)||(18414742-18414867)
chr4 (155-254)||(20870879-20870979)
chr4 (104-240)||(17524478-17524615)
chr4 (104-223)||(43913395-43913514)
chr4 (104-285)||(48845944-48846125)
chr4 (104-240)||(49984073-49984210)
chr4 (104-240)||(17524205-17524342)
chr4 (120-247)||(16399182-16399311)
chr4 (104-240)||(4416477-4416614)
chr4 (127-216)||(48658332-48658421)
chr4 (123-223)||(18414979-18415079)
chr4 (159-223)||(46397362-46397426)
chr4 (122-209)||(12714769-12714856)
chr4 (101-223)||(20269157-20269279)
chr4 (104-216)||(31141680-31141792)
chr4 (104-215)||(52485642-52485754)
chr4 (123-206)||(12292909-12292992)
chr4 (104-171)||(37724740-37724807)
chr4 (104-179)||(45170852-45170927)
chr4 (123-221)||(36752879-36752977)
chr4 (169-223)||(45170837-45170891)
chr4 (103-179)||(52485342-52485418)
[»] chr1 (30 HSPs)
chr1 (104-255)||(35795576-35795728)
chr1 (104-265)||(48171686-48171848)
chr1 (123-285)||(34518185-34518347)
chr1 (104-240)||(19987335-19987472)
chr1 (123-223)||(143106-143206)
chr1 (101-240)||(22792552-22792692)
chr1 (104-258)||(8718453-8718608)
chr1 (104-265)||(22792291-22792453)
chr1 (104-289)||(142812-142998)
chr1 (123-223)||(37245657-37245757)
chr1 (101-223)||(34517962-34518084)
chr1 (104-223)||(42604922-42605041)
chr1 (101-215)||(3072976-3073090)
chr1 (104-240)||(42604631-42604768)
chr1 (123-223)||(31872892-31872991)
chr1 (101-201)||(33460200-33460300)
chr1 (127-240)||(13189177-13189291)
chr1 (124-222)||(19987627-19987725)
chr1 (101-171)||(31872706-31872776)
chr1 (228-289)||(14419910-14419971)
chr1 (104-221)||(35795314-35795431)
chr1 (123-207)||(18519337-18519421)
chr1 (123-215)||(33459915-33460007)
chr1 (123-170)||(14419840-14419887)
chr1 (183-265)||(25622659-25622742)
chr1 (159-240)||(3075195-3075277)
chr1 (104-150)||(8718408-8718454)
chr1 (104-186)||(48171443-48171525)
chr1 (104-215)||(6043449-6043557)
chr1 (103-171)||(18519634-18519702)
[»] chr7 (16 HSPs)
chr7 (102-285)||(48462023-48462207)
chr7 (124-265)||(6376387-6376529)
chr7 (101-270)||(24185667-24185836)
chr7 (104-240)||(34535695-34535829)
chr7 (104-254)||(36469795-36469945)
chr7 (102-287)||(34535912-34536097)
chr7 (96-172)||(10017937-10018013)
chr7 (120-223)||(48461809-48461912)
chr7 (104-223)||(22566304-22566421)
chr7 (104-216)||(43510881-43510992)
chr7 (160-240)||(8560686-8560767)
chr7 (120-179)||(17813993-17814052)
chr7 (124-173)||(6376702-6376751)
chr7 (123-216)||(7460591-7460684)
chr7 (103-179)||(7460878-7460954)
chr7 (96-247)||(9997902-9998054)
[»] scaffold0056 (2 HSPs)
scaffold0056 (104-254)||(62984-63135)
scaffold0056 (159-247)||(62782-62871)
[»] chr6 (20 HSPs)
chr6 (101-223)||(32629061-32629183)
chr6 (127-265)||(32629300-32629439)
chr6 (123-246)||(10567483-10567607)
chr6 (104-221)||(34829850-34829967)
chr6 (123-203)||(22793321-22793401)
chr6 (128-240)||(6611636-6611749)
chr6 (104-216)||(6611937-6612049)
chr6 (159-254)||(10567722-10567818)
chr6 (104-171)||(22793612-22793679)
chr6 (169-247)||(28613232-28613311)
chr6 (103-173)||(6210292-6210362)
chr6 (13-49)||(2341581-2341617)
chr6 (123-254)||(28613428-28613559)
chr6 (125-223)||(17342910-17343008)
chr6 (190-263)||(17343136-17343210)
chr6 (155-216)||(29674929-29674990)
chr6 (123-171)||(11122245-11122293)
chr6 (123-179)||(28613215-28613271)
chr6 (123-211)||(29674868-29674956)
chr6 (225-265)||(29675119-29675159)
[»] chr5 (9 HSPs)
chr5 (104-223)||(33992628-33992747)
chr5 (101-223)||(25508097-25508219)
chr5 (104-222)||(19935435-19935552)
chr5 (104-284)||(33992336-33992516)
chr5 (140-223)||(34065285-34065368)
chr5 (184-265)||(16642995-16643077)
chr5 (101-171)||(16643061-16643131)
chr5 (101-173)||(19328406-19328478)
chr5 (185-217)||(41563800-41563832)
[»] chr3 (11 HSPs)
chr3 (101-254)||(54341201-54341355)
chr3 (130-285)||(19540851-19541007)
chr3 (123-223)||(51388051-51388151)
chr3 (104-216)||(33241847-33241959)
chr3 (123-223)||(48618500-48618600)
chr3 (160-247)||(33419597-33419685)
chr3 (125-240)||(37285822-37285938)
chr3 (104-223)||(33419834-33419953)
chr3 (120-211)||(30547756-30547846)
chr3 (169-211)||(33419577-33419619)
chr3 (159-252)||(7015590-7015684)
[»] scaffold0548 (1 HSPs)
scaffold0548 (104-240)||(3306-3443)
[»] scaffold0400 (2 HSPs)
scaffold0400 (104-171)||(9917-9984)
scaffold0400 (120-186)||(9596-9662)
[»] scaffold0365 (2 HSPs)
scaffold0365 (104-171)||(10560-10627)
scaffold0365 (120-186)||(10239-10305)
[»] scaffold0015 (1 HSPs)
scaffold0015 (104-171)||(47420-47487)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 32666050 - 32665774
Alignment:
Q  13 aaaattagagggagggacaaatactaactaaaatattataagnnnnnnn-atcatgaactaattcaaactctaaatattataagttttgggtttaattgc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  32666050 aaaattagagggagggacaaatactaactaaaatattataagttttttttatcatgagctagttcaaactctaaatattataattttttggcttaattgc 32665951  T
Q  112 atgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  32665950 atgtgcggtctcttatgtttatttcaggttttaagttggacctttacattt-aaaagttttaaattggacccttatgttttaagagttttaagttggtcc 32665852  T
Q  212 aaaactttactcgattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggatga 289  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  32665851 aaaactttactcgattggaataagttagtatcttcctttacttgaccgtttaaatattcggattgacaatatggatga 32665774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 9081083 - 9081358
Alignment:
Q  13 aaaattagagggagggacaaatactaactaaaatattataagnnnnnnn-atcatgaactaattcaaactctaaatattataagttttgggtttaattgc 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||        ||||||| ||| |||||||||| ||||||||||||||||| || ||||||    
T  9081083 aaaattagagggacggacaaatactaactaaaatattataagttttttttatcatgagctagttcaaactctgaatattataagttttggctt-aattgc 9081181  T
Q  112 atgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtcc 211  Q
    |||||  |||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |    
T  9081182 atgtgaagtcttttatgttcatttcaggttttaaattggacctttacattttaaaagttttaaattg-acccttatgttttaagagttttaagttggttc 9081280  T
Q  212 aaaactttactcgattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggatga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  9081281 aaaactttactcgattggaataagttagtatcttccttcacttgaccgtttaaatatccggattgacaatatggatga 9081358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 9710217 - 9710336
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||||||||||| || ||| ||||||||||||| || |||| |||||| ||||||| ||||| ||    
T  9710217 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaagtttcaa 9710316  T
Q  204 gttggtccaaaactttactc 223  Q
    ||||||||||||| ||||||    
T  9710317 gttggtccaaaacgttactc 9710336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 34687752 - 34687874
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  |  | ||||||||||||| ||||||||||||||  ||||| ||||||||| ||| || |||| ||||||| |||||| |||||    
T  34687752 ggtttaattgcatgtttgaccccttatgtttattttaggttttaagttggttctttatgttttaaaaatttcaagttggtcccttatgttttaaaagttt 34687851  T
Q  201 taagttggtccaaaactttactc 223  Q
     ||||||||||||||| ||||||    
T  34687852 caagttggtccaaaacgttactc 34687874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 18548531 - 18548676
Alignment:
Q  96 ttttgggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaag 195  Q
    |||| |||||||||||||||  | |  ||||||||||||| ||||||||||||||  ||||| |||||||||||||||| ||||   ||||  ||||||     
T  18548531 ttttaggtttaattgcatgtttgattccttatgtttattttaggttttaagttggtactttatgttttaaaagttttaagttggtttcttacgttttaaa 18548630  T
Q  196 agttttaagttggtccaaaactttactcga-ttggaataagttagt 240  Q
     |||||||||||||||||||| |||||| | ||| |||||||||||    
T  18548631 ggttttaagttggtccaaaacattactcaagttgaaataagttagt 18548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 34439635 - 34439484
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || |||||| |||| |||| | ||||||||||||| || |||| ||||||  |||||| ||||| ||    
T  34439635 ttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacgttttaaaagtttaaa 34439536  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcactt 254  Q
    ||||||||||||| ||||||   ||||| ||||||||| |||||| ||||||    
T  34439535 gttggtccaaaacgttactcacgttggattaagttagtctcttccgtcactt 34439484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 7644799 - 7644917
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||||||||||| || ||| ||||||||||||| || |||  ||||||  |||||| | |||||||||||||| |||| |||||    
T  7644799 cttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaaattttaagttggtccgaaacattact 7644898  T
Q  223 c-gattggaataagttagt 240  Q
    | |||||||||||||||||    
T  7644899 cagattggaataagttagt 7644917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 18935054 - 18935165
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  |||||||||||||||||| | |||||||||||| || ||  ||||||||| |||||| |||| ||||||| || ||| ||||| ||    
T  18935054 ttaattgcatgtttggtctcttatgtttattttaagttttaagttggtcccttttgttttaaaacttttaagttggtcccttatgttataaaagtttcaa 18935153  T
Q  204 gttggtccaaaa 215  Q
     ||||| |||||    
T  18935154 attggttcaaaa 18935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 18935457 - 18935323
Alignment:
Q  107 attgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagtt 206  Q
    |||||||||  |||| ||||||||||||| |||||| | ||||| || ||| ||||||||||||| || |||| | ||| | |||||| ||||| |||||    
T  18935457 attgcatgtttggtcccttatgtttattttaggtttcatgttggtcccttatgttttaaaagtttcaagttggtctcttgtgttttaaaagtttcaagtt 18935358  T
Q  207 ggtccaaaactttac-tcgattggaataagttagt 240  Q
    ||||| |||| |||| |  ||||||||||||||||    
T  18935357 ggtcccaaacgttactttcattggaataagttagt 18935323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 7645176 - 7645076
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||||||||| | ||||||  |||||||||||| || |||  |||||| ||||||| ||||| |||||| |||||||| |||||    
T  7645176 cttatgtttattttagtttttaagttagtcctttatattttaaaagtttcaagttgatcccttacattttaaaagtttcaagttgatccaaaacgttact 7645077  T
Q  223 c 223  Q
    |    
T  7645076 c 7645076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 7535668 - 7535546
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  | |  ||||| |||||||  ||||| ||||||| || ||| |||||||||| || || |||| |||||| ||||||   ||||    
T  7535668 ggtttaattgcatgtttgattccttatatttatttttggtttcaagttggccccttatgttttaaaagattcaagttggtcccttacattttacaggttt 7535569  T
Q  201 taagttggtccaaaactttactc 223  Q
    |||||||||||||||| ||||||    
T  7535568 taagttggtccaaaacgttactc 7535546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 4623070 - 4623207
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || |||||| |||  || ||| |||||||||||||||| |||| | ||||  ||||||  |||| ||    
T  4623070 ttaattgcatgtttgatcccttatgtttattttagtttttaaattgatcccttatgttttaaaagttttaagttggtctcttacgttttaaaggtttcaa 4623169  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||  ||||||  |||| |||||||||||    
T  4623170 gttggtccaaaatgttactcacattgaaataagttagt 4623207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 16049481 - 16049618
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    |||||||||||| || || | |||||||||||  | |||||| ||||  | ||| |||||||||||||||| |||| |||||   |||||| | ||| ||    
T  16049481 ttaattgcatgttcgatcccgtatgtttattttggtttttaatttggttccttatgttttaaaagttttaagttggtccctttcgttttaaaaatttcaa 16049580  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||| |||| |  ||||||||||||||||    
T  16049581 gttggtccaaaacgttacccacattggaataagttagt 16049618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 25879588 - 25879685
Alignment:
Q  124 ttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttac 221  Q
    ||||||||||||  | ||||||||||| || ||| ||||||||||||||||||||| | ||||  |||||| ||||| ||||| || |||||| ||||    
T  25879588 ttatgtttatttttgtttttaagttggtccattatgttttaaaagttttaaattggtcacttacgttttaatagtttcaagttagttcaaaacgttac 25879685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 16049897 - 16049780
Alignment:
Q  96 ttttgggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaag 195  Q
    |||| |||||||||||||||  | || ||||||||||||| || ||| ||||||| || ||| |||||||||||||||| |||    ||||  ||||||     
T  16049897 ttttaggtttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagttttaagttg--atcttacgttttaaa 16049800  T
Q  196 agttttaagttggtccaaaa 215  Q
    ||||| ||||||||||||||    
T  16049799 agtttcaagttggtccaaaa 16049780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 18429680 - 18429616
Alignment:
Q  159 gttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc 223  Q
    ||||||||||||| || |||| ||||||  |||||| ||||||||||||||||||||| ||||||    
T  18429680 gttttaaaagtttaaagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactc 18429616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 21445986 - 21446054
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagtttt 172  Q
    ||||||||||||  |||| ||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  21445986 ttaattgcatgtttggtcccttatatttattttagattttaagttggtcccttacgttttaaaagtttt 21446054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 34439239 - 34439335
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaac 216  Q
    |||||||||||||||| || |||||||||||  | ||| |||||||||| || || |||| ||||||  |||||| || || |||||||||||||||    
T  34439239 tctcttatgtttattttagtttttaagttggttcgttaggttttaaaagattcaagttggtcccttacgttttaaaagattcaagttggtccaaaac 34439335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 7535301 - 7535362
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaa 165  Q
    ||||||||||||  |||||||||||||||||| | |||||||||||| | |||| |||||||    
T  7535301 ttaattgcatgtttggtctcttatgtttattttacgttttaagttggtcttttatgttttaa 7535362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 25879908 - 25879829
Alignment:
Q  162 ttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttac-tcgattggaataagttagt 240  Q
    |||||||||| || |||| |||||||||||||| ||||| |||||||| |||||  |||| |  ||||||||||||||||    
T  25879908 ttaaaagtttcaagttggtcccttatattttaaaagtttcaagttggttcaaaatgttacatatattggaataagttagt 25879829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 4623512 - 4623406
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| ||||||  |||||| ||||||||||||| ||  | | | ||||| |||||| ||||| ||    
T  4623512 ttaattgcatgtttgatcccttatgtttattttagttttcaagttgatcctttatgttttaaaagtttcaagatagtcacttatgttttaaaagtttcaa 4623413  T
Q  204 gttggtc 210  Q
    |||||||    
T  4623412 gttggtc 4623406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 7535356 - 7535430
Alignment:
Q  197 gttttaagttggtccaaaactttactcg-attggaataagttagtatcttccttcacttgaccgtttaaatattc 270  Q
    ||||||||||||| |||||| ||||||  |||||||||||||||| ||||   |||||||| |||||||| ||||    
T  7535356 gttttaagttggttcaaaacgttactcacattggaataagttagtttcttttatcacttgatcgtttaaagattc 7535430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 6412374 - 6412650
Alignment:
Q  13 aaaattagagggagggacaaatactaactaaaatattataagnnnnnnn-atcatgaactaattcaaactctaaatattataagttttgggtttaattgc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||| ||| ||||||||||||||||||||| |||| || ||||||||    
T  6412374 aaaattagagggagggacaaatactaactaaaatattataagttttttttatcatgagctagttcaaactctaaatattataattttttggcttaattgc 6412473  T
Q  112 atgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  6412474 atgtgcggtctcttatgtttatttcaggttttaagttggacctttacattt-aaaagttttaaattggacccttatgttttaagagtttcaagttggtcc 6412572  T
Q  212 aaaactttactcgattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggatga 289  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  6412573 aaaactttagtcgattggaataagttagtatcttccttcacttaaccgtttaaatattcggattgacaatatggatga 6412650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 15988641 - 15988524
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    |||||||||||||  ||||| | ||||| |||| | ||||||||||||| || |||| |||||||||||||| ||||||||||||||||||||| |||||    
T  15988641 cttatgtttattttcggtttcatgttggtcctt-atgttttaaaagtttcaagttggtcccttatattttaaaagttttaagttggtccaaaacattact 15988543  T
Q  223 c-gattggaataagttagt 240  Q
    |  ||||||||||||||||    
T  15988542 cacattggaataagttagt 15988524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 13490191 - 13490312
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaacttt 219  Q
    ||||||||||||| || || ||||||||||  |||||| |||||||||||||||| |||| | ||||  |||||| ||||||||||||||||||||| ||    
T  13490191 tctcttatgtttactttagtttttaagttgatcctttatgttttaaaagttttaagttggtctcttacgttttaaaagttttaagttggtccaaaacgtt 13490290  T
Q  220 actc-gattggaataagttagt 240  Q
    ||||   |||||||||||||||    
T  13490291 actcacgttggaataagttagt 13490312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 247
Target Start/End: Original strand, 27956726 - 27956870
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || |||||| | || |||| | ||||||||||||||||||||| ||||||  |||||| ||||| ||    
T  27956726 ttaattgcatgtttgatcccttatgtttattttagtttttaaataggtccttcatgttttaaaagttttaaattggtcccttacgttttaaaagtttcaa 27956825  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttcc 247  Q
    ||||||||||||| |||| |   ||||||||||||||| ||||||    
T  27956826 gttggtccaaaacattacccacgttggaataagttagtttcttcc 27956870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 246
Target Start/End: Complemental strand, 29526986 - 29526862
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| |  ||||||||||| || ||| |||||||||||||||| |||| ||||||  |||||| ||||| ||||||||||||||| |||||    
T  29526986 cttatgtttattttaatttttaagttggtccattatgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttact 29526887  T
Q  223 c-gattggaataagttagtatcttc 246  Q
    |   ||||||||||||||| |||||    
T  29526886 cacgttggaataagttagtctcttc 29526862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 24284214 - 24284030
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||   | | || |||||||||| |||||  || |||| || ||| |||||||||||||||| || ||| |||||||||||| |||||    
T  24284214 ggtttaattgcatgtttagcccctcatgtttattttaggttacaaattggtcccttatgttttaaaagttttaagtttgactcttatattttaaaagttt 24284115  T
Q  201 taagttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatg 284  Q
     ||||||  ||||||| ||||||   ||  |||||||||||  ||||| ||||||||||||||| | |||||| |||| ||||||    
T  24284114 caagttgacccaaaacattactcatcttaaaataagttagttccttccgtcacttgaccgtttagagattcgggttgagaatatg 24284030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 32622608 - 32622481
Alignment:
Q  96 ttttgggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaag 195  Q
    |||| |||||||||||||||  | || ||||||||||||| || ||||||||||| |||| | ||||||||||||| || |||| |  |||  | ||||     
T  32622608 ttttaggtttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccttcatgttttaaaagtttgaagttggtcttttacgtattaaa 32622509  T
Q  196 agttttaagttggtccaaaactttactc 223  Q
    ||||||||||||||||||||| ||||||    
T  32622508 agttttaagttggtccaaaacgttactc 32622481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 288
Target Start/End: Complemental strand, 44995452 - 44995288
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    |||| |||||||| || |||||||||||  ||| |  |||||||||||| || |||| ||||||  |||||| ||| | ||||||||||||||| |||||    
T  44995452 cttacgtttattttagtttttaagttggtacttcatattttaaaagtttcaagttggtcccttacgttttaaaagtatcaagttggtccaaaacgttact 44995353  T
Q  223 c-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggatg 288  Q
    |   ||||||||||||||| |||||| |||||| |   |||||| |||||| |||| ||||||||||    
T  44995352 cacgttggaataagttagtctcttccgtcacttaa--atttaaagattcgggttgacaatatggatg 44995288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 13140310 - 13140400
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaa 213  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||||||| |||| | ||||  ||||||  |||| ||||||||||||    
T  13140310 cttatgtttattttaggttttaagttggtcttttatgttttaaaagttttaagttggtcacttacgttttaaaggtttcaagttggtccaa 13140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 26845591 - 26845473
Alignment:
Q  106 aattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttat-attttaagagttttaag 204  Q
    ||||||||||  |||| ||||||||||||| |||||||||||||| || ||| ||||||||||||| || |||| || ||||  |||||| ||||| | |    
T  26845591 aattgcatgtttggtcccttatgtttattttaggttttaagttggtcccttatgttttaaaagtttcaagttggtcctttatgtttttaacagtttcatg 26845492  T
Q  205 ttggtccaaaactttactc 223  Q
    ||||| |||||| ||||||    
T  26845491 ttggttcaaaacgttactc 26845473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 14473922 - 14473804
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    |||| |||||||| |||||| |||| || || ||| |||||||||||||||| ||||   ||| | |||| ||||||| ||||||||||||||| |||||    
T  14473922 cttacgtttattttaggtttcaagtaggtcccttatgttttaaaagttttaagttggtgtcttttgttttgagagtttcaagttggtccaaaacgttact 14473823  T
Q  223 c-gattggaataagttagt 240  Q
    |   |||||||||||||||    
T  14473822 cattttggaataagttagt 14473804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 6795585 - 6795472
Alignment:
Q  102 gtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagtttt 201  Q
    ||||||||||||||  | || | ||| ||||||| |||||||||||||| || ||| ||||||||||||| || |||| |||| |  |||||| |||||     
T  6795585 gtttaattgcatgtttgatcccctatatttattttaggttttaagttggtccattatgttttaaaagtttaaagttggtccctaacgttttaaaagttta 6795486  T
Q  202 aagttggtccaaaa 215  Q
    |||||||| |||||    
T  6795485 aagttggttcaaaa 6795472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 14473540 - 14473638
Alignment:
Q  166 aagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgttta 263  Q
    ||||||| | |||| ||||||| |||||| ||||||||||| ||||||||  ||| ||  ||||||||||||||||  ||||| ||||||| |||||||    
T  14473540 aagttttgagttggtcccttatgttttaaaagttttaagtttgtccaaaatgttaatcatattggaataagttagtcccttccatcacttggccgttta 14473638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 39060309 - 39060391
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggaccctta 186  Q
    ||||||||||||  | || ||||||||||||| || ||||||||||| || | | |||||||||||||||| |||| ||||||    
T  39060309 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccctaatgttttaaaagttttaagttggtccctta 39060391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 1352852 - 1352944
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaa 215  Q
    ||||||||||||| ||||||||| |||| || ||   ||||| || |||||| |||| | |||| ||||||| ||||||||||||||| ||||    
T  1352852 cttatgtttattttaggttttaaattggtcccttgtattttacaaattttaagttggtctcttacattttaaaagttttaagttggtctaaaa 1352944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 1353215 - 1353147
Alignment:
Q  103 tttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    |||||||| ||||  ||||||| |||||||||| |||||||||||||| |  ||| |||||||||||||    
T  1353215 tttaattgtatgtttggtctctcatgtttattttaggttttaagttggtctcttatgttttaaaagttt 1353147  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 33203135 - 33203175
Alignment:
Q  13 aaaattagagggagggacaaatactaactaaaatattataa 53  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  33203135 aaaattagagggagcgacaaatactaaccaaaatattataa 33203175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 27957116 - 27957013
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaacttt 219  Q
    |||||||||||||||| |||||| |||| || |  |||  ||||||||||||||| |||| || |||   |||||  |||| ||||||||||||||| ||    
T  27957116 tctcttatgtttattttaggtttcaagtaggtctcttatattttaaaagttttaacttggtccgttacgctttaaatgtttcaagttggtccaaaacgtt 27957017  T
Q  220 actc 223  Q
    ||||    
T  27957016 actc 27957013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 14473507 - 14473577
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaa 174  Q
    ||||||||||||  |||| ||| ||||||||| | ||||| |||||| || ||| ||||||||||||||||    
T  14473507 ttaattgcatgtttggtcgcttttgtttattttaagttttgagttggtcccttatgttttaaaagttttaa 14473577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 3217286 - 3217423
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  |||| ||| ||| ||| | |||||| | ||||| || ||| |||||||| |||| || |||| || |||| |||||| | ||| ||    
T  3217286 ttaattgcatgtttggtcccttgtgtatatcttaggtttcatgttggtcccttatgttttaaaggtttcaagttggtccattatgttttaaaattttcaa 3217385  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||| ||||| ||||||   |||||||||||||||    
T  3217386 gttggtctaaaacgttactcacgttggaataagttagt 3217423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 24015831 - 24015956
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||| ||||||  || ||| |||||||||||||||| |||| || |||  |||| | | ||| | ||||||||||||| |||||    
T  24015831 cttatgtttattttagttttcaagttgatcccttatgttttaaaagttttaagttggtcctttacgttttgaaaatttcatgttggtccaaaacattact 24015930  T
Q  223 -cgattggaataagttagtatcttcc 247  Q
       |||| ||||||||||| ||||||    
T  24015931 gacattgaaataagttagtctcttcc 24015956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 38262888 - 38262783
Alignment:
Q  159 gttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact-cgattggaataagttagtatcttccttcacttgac 257  Q
    |||| |||||||| ||||| | | |||||||||||| ||||||||||| |||  |||| ||||| | ||| ||||||||||||   |||  |||||||||    
T  38262888 gtttcaaaagtttcaaattagtctcttatattttaaaagttttaagtttgtctcaaacgttactcccattagaataagttagtcctttctatcacttgac 38262789  T
Q  258 cgttta 263  Q
    ||||||    
T  38262788 cgttta 38262783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 4416897 - 4416752
Alignment:
Q  96 ttttgggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaag 195  Q
    |||| |||||||||||||||  | |||||||||||||||| || ||||||||||| || ||| ||||||||| |||||| |||| |||||| |||||||     
T  4416897 ttttaggtttaattgcatgtttgatctcttatgtttattttagtttttaagttggtcccttatgttttaaaaattttaagttggtcccttacattttaaa 4416798  T
Q  196 agttttaagttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||    
T  4416797 agttttaagttggtccaaaacgttactcacattggaataagttagt 4416752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 4592765 - 4592586
Alignment:
Q  106 aattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagt 205  Q
    ||||||||||  |||| ||||||||||||| |||||||||||||| |  ||| |||||||||||||||| |||| ||||||| |||||| ||||| ||||    
T  4592765 aattgcatgtttggtcccttatgtttattttaggttttaagttggtctcttatgttttaaaagttttaagttggtcccttatgttttaacagtttcaagt 4592666  T
Q  206 tggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatg 284  Q
    |||| |||||| ||||||  ||| |||||| ||||| |||||  |||||||||||| |||| |||||| |||| ||||||    
T  4592665 tggttcaaaacgttactcacattagaataaattagtctcttctatcacttgaccgtgtaaagattcgggttgacaatatg 4592586  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 54702383 - 54702215
Alignment:
Q  123 cttatgtttatttcaggttttaagttgga-cctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttac 221  Q
    |||||| |||||| ||||||||||||||  || ||  |||||||||||||||| |||| ||||||| |||||| |||||||||||| | |||||  ||||    
T  54702383 cttatgattattttaggttttaagttggttcccttctgttttaaaagttttaagttggtcccttatgttttaacagttttaagttgattcaaaatgttac 54702284  T
Q  222 tc-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggatga 289  Q
    ||  ||| |||||||| ||| |||||| |||||| |||||||| | |||||| |||| |||||||||||    
T  54702283 tcacattagaataagtcagtctcttccgtcacttaaccgtttagagattcgggttgacaatatggatga 54702215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 45505471 - 45505327
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| ||||||| || ||| ||||||||||||| || |||| ||||||  |||||| ||||| ||    
T  45505471 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaa 45505372  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttcc 247  Q
    ||||||||||||| ||||||  ||| |||||||||||| ||||||    
T  45505371 gttggtccaaaacgttactcacattagaataagttagtctcttcc 45505327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 37724440 - 37724591
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | |||||||||||||||| || |||||| |||| |||| | | ||||||||||| || |||| |||||| ||||||| | ||| ||    
T  37724440 ttaattgcatgtatgatctcttatgtttattttagtttttaaattggtccttcatgatttaaaagtttcaagttggtcccttacattttaaaattttcaa 37724539  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcactt 254  Q
     |||||||||||| ||||||   ||||||||||||||| |||||| ||||||    
T  37724540 attggtccaaaacgttactcatgttggaataagttagtctcttccgtcactt 37724591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 11306665 - 11306528
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| ||||||| || ||| ||||||||||||| || |||| ||||||  |||||| ||||| ||    
T  11306665 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaa 11306566  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||| ||||||   |||||||||||||||    
T  11306565 gttggtccaaaacgttactcactttggaataagttagt 11306528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 48845713 - 48845850
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | |||||||||||||||| || || |||||||| || ||| ||||||||||||| || |||| ||||||  |||||| | ||||||    
T  48845713 ttaattgcatgtttgatctcttatgtttattttagtttataagttggccccttatgttttaaaagtttcaagttggtcccttacgttttaaaaattttaa 48845812  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||  ||||||  |||| |||||||||||    
T  48845813 gttggtccaaaatgttactcacattgaaataagttagt 48845850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 49983794 - 49983931
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  |||| ||| || |||||| || ||| ||||||| |||||| ||||||||||||| || |||| ||||||| |||||| | ||||||    
T  49983794 ttaattgcatgtttggtcccttgtgcttattttagatttcaagttggtcctttatgttttaaaagtttgaagttggtcccttatgttttaaaaattttaa 49983893  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    |||||| |||||| ||||||  ||| ||||||||||||    
T  49983894 gttggttcaaaacgttactcacatttgaataagttagt 49983931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 18414742 - 18414867
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| |  ||||||||||| || ||| ||||||||||||| || |||| |||||| ||||||| | ||| |||||||| |||||| |||||    
T  18414742 cttatgtttattttaatttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaaatttcaagttggttcaaaacgttact 18414841  T
Q  223 c-gattggaataagttagtatcttcc 247  Q
    |   ||||||||||||||| ||||||    
T  18414842 cacgttggaataagttagtctcttcc 18414867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 20870879 - 20870979
Alignment:
Q  155 ttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagtatcttccttcact 253  Q
    |||||||||||||||||||| |||| ||||||  |||||| ||||| ||||| ||||||||| ||||||  ||||||||||||||||  ||||| |||||    
T  20870879 ttacgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagttagtcccttccgtcact 20870978  T
Q  254 t 254  Q
    |    
T  20870979 t 20870979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 17524615 - 17524478
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | ||||||| |||||||| || ||| |||||||  |||||  |||||||||||| || |||  ||||||| |||||| ||||||||    
T  17524615 ttaattgcatgtttgatctcttacgtttattttagttttcaagttggtactttattttttaaaagtttcaagttgatcccttatgttttaaaagttttaa 17524516  T
Q  204 gttggtccaaaactttact--cgattggaataagttagt 240  Q
    ||||| ||||||| |||||  || |||||||||||||||    
T  17524515 gttggaccaaaacgttacttacg-ttggaataagttagt 17524478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 43913395 - 43913514
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||||||||||| || |||  |||||||||||||||||||| |  |||  |||||| ||||| ||    
T  43913395 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttatattttaaaagttttaaattggtcttttacgttttaaaagtttcaa 43913494  T
Q  204 gttggtccaaaactttactc 223  Q
    |||| |||||||| ||||||    
T  43913495 gttgatccaaaacgttactc 43913514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 285
Target Start/End: Complemental strand, 48846125 - 48845944
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| |  ||||||||||| || ||| ||||||||||||||||  |||  |||||| |||||| ||||| ||    
T  48846125 ttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgttttaaaagttttaagatggtgccttatgttttaaaagtttcaa 48846026  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatgg 285  Q
    ||||| | ||||| ||||||   ||||||||| ||||| |||||  |||||| | || ||||| |||||| |||| |||||||    
T  48846025 gttggactaaaacgttactcacgttggaataaattagtctcttcagtcactt-aacgattaaagattcgggttgagaatatgg 48845944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 49984210 - 49984073
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagtttt-a 202  Q
    ||||||||||||  | || ||||||||||||| |||||| | |||||  | ||| ||||||||||||| || |||| ||||||| |||||| |||||| |    
T  49984210 ttaattgcatgtttgatcccttatgtttattttaggtttcatgttggttccttatgttttaaaagtttcaagttggtcccttatgttttaa-agttttca 49984112  T
Q  203 agttggtccaaaactttactc-gattggaataagttagt 240  Q
    |||||||||||||| ||||||   |||||||||||||||    
T  49984111 agttggtccaaaacgttactcacgttggaataagttagt 49984073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 17524205 - 17524342
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| ||||||| || ||| ||||||||||||| || |||  | ||||| |||||| ||||| ||    
T  17524205 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatctcttatgttttaaaagtttcaa 17524304  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
     ||| |||||||| ||||||  ||||||||||||||||    
T  17524305 attgatccaaaacgttactcacattggaataagttagt 17524342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 16399311 - 16399182
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaacttt 219  Q
    |||||||||||||||| || |||||| |||| |||||| ||||||||| |||||| |||| |  |||  ||||||  |||||| ||||||| ||||| ||    
T  16399311 tctcttatgtttattttagattttaaattggtcctttatgttttaaaatttttaagttggtcgtttacgttttaaaggttttatgttggtcaaaaacgtt 16399212  T
Q  220 act--cgattggaataagttagtatcttcc 247  Q
    |||  || ||| ||||||||||||| ||||    
T  16399211 actcacgtttgaaataagttagtattttcc 16399182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 4416477 - 4416614
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||  ||||||| || ||||||||||  || ||| ||||||||||||| || |||| || |||  |||||| ||||| ||    
T  4416477 ttaattgcatgtttgatcccttacatttattttagtttttaagttgatcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttcaa 4416576  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||| ||||||   |||||||||||||||    
T  4416577 gttggtccaaaacgttactcacgttggaataagttagt 4416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 48658421 - 48658332
Alignment:
Q  127 tgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaac 216  Q
    ||||||||| || |||||| |||| | || |  ||||||||||||||| |||| |||||| ||||||| ||||||||||||||| |||||    
T  48658421 tgtttattttagtttttaaattggtcattcatattttaaaagttttaagttggtcccttagattttaaaagttttaagttggtcaaaaac 48658332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 18415079 - 18414979
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||| ||||||  |||| | ||||||||||||| || |||| |||||   |||||| ||||| ||||||||||||||| |||||    
T  18415079 cttatgtttattttagttttcaagttgatccttcatgttttaaaagtttcaagttggtcccttgcgttttaaaagtttcaagttggtccaaaacgttact 18414980  T
Q  223 c 223  Q
    |    
T  18414979 c 18414979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 46397362 - 46397426
Alignment:
Q  159 gttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc 223  Q
    ||||||||||||| || |||| ||||||  |||||| ||||||||||||||||||||| ||||||    
T  46397362 gttttaaaagtttcaagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactc 46397426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 12714769 - 12714856
Alignment:
Q  122 tcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggt 209  Q
    |||||||||||||| |  ||||||||||| | |||| | ||||| ||||||||||||  | ||||| |||||| ||||||||||||||    
T  12714769 tcttatgtttatttgaatttttaagttggtcatttatggtttaagagttttaaattgatctcttatgttttaaaagttttaagttggt 12714856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 20269279 - 20269157
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  | |||| ||||||||||| | |||||||||||| |  ||| ||||||||| ||| || | |  ||||||  ||||||  ||||    
T  20269279 ggtttaattgcatgtttgatctcgtatgtttattttacgttttaagttggtctcttatgttttaaaaatttaaagtcgttcccttacgttttaaaggttt 20269180  T
Q  201 taagttggtccaaaactttactc 223  Q
     ||||||||||||||| ||||||    
T  20269179 caagttggtccaaaacattactc 20269157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 31141680 - 31141792
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  |||| | ||||||||| | |||||| ||||||| | |||| ||||||||  |||||| || | ||||||| |||||| ||||| ||    
T  31141680 ttaattgcatgtttggtcccgtatgtttatcttaggtttcaagttggtcatttatgttttaaattttttaagttagtcccttatgttttaaaagtttcaa 31141779  T
Q  204 gttggtccaaaac 216  Q
     || |||||||||    
T  31141780 attcgtccaaaac 31141792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 52485754 - 52485642
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggtttt-aagttggacctttacgttttaaaagttttaaattggacccttatattttaagagtttta 202  Q
    ||||||||||||  | ||| |||||||||||| || |||| ||||||| || |||  ||||||||||||||| | || | |||| ||||||| ||||| |    
T  52485754 ttaattgcatgtttgatcttttatgtttattttagttttttaagttggtcccttatattttaaaagttttaagtgggtctcttacattttaaaagtttca 52485655  T
Q  203 agttggtccaaaa 215  Q
    ||| |||||||||    
T  52485654 agtcggtccaaaa 52485642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 12292909 - 12292992
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagtt 206  Q
    ||||||||||||| |||||| ||||||| || ||  ||||||||||||| || ||||  |||||| |||||| | |||||||||    
T  12292909 cttatgtttattttaggtttaaagttggtcccttttgttttaaaagtttcaagttggtaccttatgttttaaaaattttaagtt 12292992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 37724807 - 37724740
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    ||||||||||||  | |||||||||||||||| || ||||||||||  || ||| |||||||||||||    
T  37724807 ttaattgcatgtttgatctcttatgtttattttagtttttaagttgatcccttaggttttaaaagttt 37724740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 45170927 - 45170852
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattgg 179  Q
    ||||||||||||  | || ||||||||||||| || |||||| |||| |||| | |||||||||||||||| ||||    
T  45170927 ttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaagttttaagttgg 45170852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 36752879 - 36752977
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttac 221  Q
    ||||||||||||| |  |||||| |||| |||| | ||||||||||||| || |||| |||||   |||||| | ||| ||||||||||||||| ||||    
T  36752879 cttatgtttattttaatttttaaattggtccttcatgttttaaaagtttcaagttggtcccttgcgttttaaaaatttcaagttggtccaaaacgttac 36752977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 45170891 - 45170837
Alignment:
Q  169 ttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc 223  Q
    ||||||||||| || | || |||||| ||||||||||||||||||||| ||||||    
T  45170891 ttttaaattggtccttcatgttttaaaagttttaagttggtccaaaacgttactc 45170837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 52485342 - 52485418
Alignment:
Q  103 tttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattgg 179  Q
    |||||||||||||  | ||  |||||||||||| || ||||||||||  || ||| |||||||||||||||| ||||    
T  52485342 tttaattgcatgtttgatccattatgtttattttagtttttaagttgatcccttatgttttaaaagttttaagttgg 52485418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 35795728 - 35795576
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  ||||  |||||||||||| || ||||||||||| || | | ||||||||||||||||||||| ||||||| |||||| ||||| ||    
T  35795728 ttaattgcatgtttggtcctttatgtttattttagattttaagttggtccctgatgttttaaaagttttaaattggtcccttatgttttaaaagtttcaa 35795629  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcacttg 255  Q
    |||||| |||||| ||||||  ||  |||||||||||| |||||| |||||||    
T  35795628 gttggttcaaaacgttactcacataagaataagttagtctcttccatcacttg 35795576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 48171848 - 48171686
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  |||| ||||||||||||| |||||| ||||||| |||||| ||||||||||||| ||  ||  ||||||| |||||| ||||| ||    
T  48171848 ttaattgcatgtttggtcccttatgtttattttaggtttcaagttggtcctttatgttttaaaagtttcaagctgttcccttatgttttaaaagtttcaa 48171749  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaa 265  Q
    |||||| |||||| ||||||  ||| ||||||||||||  ||||| ||||| |||||| ||||    
T  48171748 gttggttcaaaacgttactcacatttgaataagttagtcccttccgtcactagaccgtataaa 48171686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 34518347 - 34518185
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||||||||||| ||||||  |||||||||||||||||||| ||||||  |||||| | ||| ||||||||||||||| |||||    
T  34518347 cttatgtttattttagtttttaagttggtcctttatattttaaaagttttaaattggtcccttacgttttaaaaatttcaagttggtccaaaacgttact 34518248  T
Q  223 c-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatgg 285  Q
    |   || ||||||||||||  || | ||||||| |  |||||||||||||| |||| |||||||    
T  34518247 cacgttagaataagttagtccctccattcactt-aatgtttaaatattcgggttgacaatatgg 34518185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 19987335 - 19987472
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || | ||||||||||| || ||||||||||  |||||| |||||||||||||||| |||| ||||||  |||||| ||||| ||    
T  19987335 ttaattgcatgtttgatcccatatgtttattttagtttttaagttgttcctttatgttttaaaagttttaagttggtcccttaagttttaaaagtttcaa 19987434  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    |||| |||||||| ||||||  ||||||||||||||||    
T  19987435 gttgatccaaaacgttactcacattggaataagttagt 19987472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 143206 - 143106
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| |||||||||||||| ||| || | |||||||||||||| |||| ||||||  |||||| ||||| ||||||||||||||| |||||    
T  143206 cttatgtttattttaggttttaagttggtcctatatgctttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttact 143107  T
Q  223 c 223  Q
    |    
T  143106 c 143106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 22792692 - 22792552
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||| ||||  |||| | ||||||||||| |||||||||||||| || ||| |||||||||||||||| |||| ||||||  ||| ||  ||||    
T  22792692 ggtttaattgtatgtttggtcccatatgtttattttaggttttaagttggtcccttaagttttaaaagttttaagttggtcccttacgtttgaaaggttt 22792593  T
Q  201 taagttggtccaaaactttactc-gattggaataagttagt 240  Q
     ||||| ||||||||| ||||||  ||||||||||||||||    
T  22792592 caagttagtccaaaacgttactcacattggaataagttagt 22792552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 8718608 - 8718453
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || | ||||||||||| |||||||||||||| || |||  |||||||||||| || || | ||||||| |||||| | ||| ||    
T  8718608 ttaattgcatgtttgatcccatatgtttattttaggttttaagttggtcccttattttttaaaagtttcaagtttgtcccttatgttttaaaattttcaa 8718509  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgacc 258  Q
    |||||| |||||| ||||||  |||||||||||||||| |||||  ||||||||||    
T  8718508 gttggttcaaaacgttactcacattggaataagttagtctcttctgtcacttgacc 8718453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 22792291 - 22792453
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    |||||||||| |  |||| | ||||||||||| | |||||||||||| || ||  |||||||||||||||| |||| || |||| |||||| ||||| |     
T  22792291 ttaattgcatatttggtcccatatgtttattttaagttttaagttggtcccttttgttttaaaagttttaagttggtccgttatgttttaaaagtttcat 22792390  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaa 265  Q
    |||| | |||||| ||||||  |||| |||||||||||| ||||| ||||||| |||||||||    
T  22792391 gttgattcaaaacgttactcatattgaaataagttagtaccttccgtcacttggccgtttaaa 22792453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 289
Target Start/End: Original strand, 142812 - 142998
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||   ||| ||||||| ||||| |||||||||||||| || ||  ||||||||| ||| || |||| ||||||| |||||| ||||| ||    
T  142812 ttaattgcatgttttgtcccttatgtgtattttaggttttaagttggtcccttgtgttttaaaattttcaagttggtcccttatgttttaaaagtttcaa 142911  T
Q  204 gttggtccaaaactttac-tcgattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggatga 289  Q
     || ||  ||||| |||| |  |||||| |||||||||  ||||  ||||||||| ||||||| |||||| |||| |||||||||||    
T  142912 atttgtttaaaacgttacttacattggagtaagttagtcccttctatcacttgactgtttaaagattcgggttgaaaatatggatga 142998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 37245657 - 37245757
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||||||||||| |  |||  |||||||||||| || |||  |||||| ||||||| ||||||||||||||||||||| |||||    
T  37245657 cttatgtttattttagtttttaagttggtctcttatattttaaaagtttcaagttgatcccttacattttaaaagttttaagttggtccaaaacgttact 37245756  T
Q  223 c 223  Q
    |    
T  37245757 c 37245757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 34517962 - 34518084
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  | || ||||||||||||| || ||||||||||| || ||| ||||||| ||||| || | || ||| ||  |||||| |||||    
T  34517962 ggtttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccattatgttttaacagtttcaactcggtcccctacgttttaaaagttt 34518061  T
Q  201 taagttggtccaaaactttactc 223  Q
    ||||||||| |||||| ||||||    
T  34518062 taagttggttcaaaacgttactc 34518084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 42605041 - 42604922
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| |||||||||| ||| ||||||||||||| || |||| ||||||  |||| | ||||| |     
T  42605041 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggacccttaggttttaaaagtttcaagttggtcccttacgtttttaaagtttcat 42604942  T
Q  204 gttggtccaaaactttactc 223  Q
    ||||||| ||||| ||||||    
T  42604941 gttggtcaaaaacgttactc 42604922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 3072976 - 3073090
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  | ||  |||||||||||| || ||||||||||| || ||  |||||||||||||||| |||| | ||||  |||||| |||||    
T  3072976 ggtttaattgcatgtttgatcctttatgtttattttagattttaagttggtcccttgtgttttaaaagttttaagttggtctcttacgttttaaaagttt 3073075  T
Q  201 taagttggtccaaaa 215  Q
     ||||||||| ||||    
T  3073076 caagttggtctaaaa 3073090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 42604631 - 42604768
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| |||||||  |||||  |||||||||||| || |||| |||||   |||||| ||||| ||    
T  42604631 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtactttatattttaaaagtttcaagttggtccctttagttttaaaagtttcaa 42604730  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||| ||||| ||||||   |||||||||||||||    
T  42604731 gttggtctaaaacgttactcacgttggaataagttagt 42604768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 31872991 - 31872892
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||| ||||||| || | | ||||||||||||| || |||| ||||||  |||||| ||||| ||||||||||||||| |||||    
T  31872991 cttatgtttattttagttttcaagttggtccct-atgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttact 31872893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 33460300 - 33460200
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  | |||||||||||||||| || ||| ||||||| || ||| ||||||||||||| || |||  ||||||  |||||| |||||    
T  33460300 ggtttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaagttt 33460201  T
Q  201 t 201  Q
    |    
T  33460200 t 33460200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 13189177 - 13189291
Alignment:
Q  127 tgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactcg-a 225  Q
    ||||||||| ||||||| |||||| || |||  ||||||||||||||| ||||  | ||||||||||| ||| |  ||||||| |||||| ||||||| |    
T  13189177 tgtttattttaggttttcagttggtcccttatattttaaaagttttaagttggtgctttatattttaaaagtatcgagttggttcaaaacgttactcgca 13189276  T
Q  226 ttggaataagttagt 240  Q
     || |||||||||||    
T  13189277 atgaaataagttagt 13189291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 19987725 - 19987627
Alignment:
Q  124 ttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    |||||||||||| || ||| |||||||  | ||  |||||||||||||||  |||| |||| | ||||||| |||||||||||| |||||||| |||||    
T  19987725 ttatgtttattttagttttcaagttggttccttgtgttttaaaagttttattttggtccctcacattttaaaagttttaagttgatccaaaacgttact 19987627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 31872706 - 31872776
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    |||||||||||||||  | || ||||||||||||| || ||| ||||||| || |||||||||||||||||    
T  31872706 ggtttaattgcatgtttgatcccttatgtttattttagttttaaagttggtcccttacgttttaaaagttt 31872776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 14419910 - 14419971
Alignment:
Q  228 ggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggatga 289  Q
    ||||||||||||| |||||| |||||||| |||||||| |||||| |||| ||||| |||||    
T  14419910 ggaataagttagtctcttccgtcacttgatcgtttaaagattcgggttgacaatattgatga 14419971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 35795314 - 35795431
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | |||||||||||||||| || ||| ||||||| || ||  |||||||||||||  | |||| ||||||  ||||||  |||| ||    
T  35795314 ttaattgcatgtttgatctcttatgtttattttagatttcaagttggtcccttgagttttaaaagtttcgagttggtcccttacgttttaaaggtttcaa 35795413  T
Q  204 gttggtccaaaactttac 221  Q
    | ||||||||||| ||||    
T  35795414 ggtggtccaaaacgttac 35795431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 18519337 - 18519421
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttg 207  Q
    ||||||||||||| || ||||||||||| || ||| |||||||| ||||||| |||| ||||||  |||||| | ||| ||||||    
T  18519337 cttatgtttattttagtttttaagttggtcccttatgttttaaatgttttaagttggtcccttacgttttaaaaatttcaagttg 18519421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 33459915 - 33460007
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaa 215  Q
    ||||||||||||| || ||| ||||| | || ||| ||||||||||||| || |||| || |||  |||||| ||||| ||||||||||||||    
T  33459915 cttatgtttattttagttttcaagttagtcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttcaagttggtccaaaa 33460007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 14419840 - 14419887
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagtt 170  Q
    ||||||||||||| |||||||||||||| || ||| ||||||||||||    
T  14419840 cttatgtttattttaggttttaagttggtcccttatgttttaaaagtt 14419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 25622659 - 25622742
Alignment:
Q  183 cttatattttaagagttttaagttggtccaaaactttactcg-attggaataagttagtatcttccttcacttgaccgtttaaa 265  Q
    ||||| |||| | ||||| |||||||| |||||| ||||||  |||||||||||||||| |||||  ||||||||||| |||||    
T  25622659 cttatgttttgaaagtttcaagttggttcaaaacgttactcacattggaataagttagtctcttctctcacttgaccggttaaa 25622742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 3075277 - 3075195
Alignment:
Q  159 gttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||| || |||| || |||  |||||| ||||| ||||| ||||||||| ||||||  ||||||||||||||||    
T  3075277 gttttaaaagtttcaagttggtccattacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagttagt 3075195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 8718408 - 8718454
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttgg 150  Q
    ||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  8718408 ttaattgcatgtttggtctcttgtgtttattttaggttttaagttgg 8718454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 48171443 - 48171525
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggaccctta 186  Q
    ||||||||||||  | || ||||||||||||| |||||| | ||||| || ||| ||||||||||||| || |||| ||||||    
T  48171443 ttaattgcatgtttgatcccttatgtttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttggtccctta 48171525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 6043449 - 6043557
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  |||| ||||| ||||||| ||||||||||||   || |||  ||||||| |||| || || | || |||||||||||  |||||||    
T  6043449 ttaattgcatgtttggtcccttatatttattttaggttttaagtt---ccattatattttaaatgtttcaagtttgtccattatattttaattgttttaa 6043545  T
Q  204 gttggtccaaaa 215  Q
    |||| |||||||    
T  6043546 gttgatccaaaa 6043557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 18519702 - 18519634
Alignment:
Q  103 tttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    |||||||||||||  | |||||||||||||||| || ||| ||||||| |   ||||||||||||||||    
T  18519702 tttaattgcatgtttgatctcttatgtttattttagttttcaagttggtctcatacgttttaaaagttt 18519634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 285
Target Start/End: Complemental strand, 48462207 - 48462023
Alignment:
Q  102 gtttaattgcatgtgcggtctcttatgttt-atttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||| |||||  | |||||||||||| |||| || ||||||||||| || ||| ||||||||||||| || |||| |  |||| |||||| |||||    
T  48462207 gtttaattacatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtttcaagttggtcatttatgttttaaaagttt 48462108  T
Q  201 taagttggtccaaaactttactcg-attggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatgg 285  Q
    ||||||| |||||||| |||| ||  ||||||||||||||| |||||| |||||| | |||||||| ||| ||||||| |||||||    
T  48462107 taagttgatccaaaacgttacccgccttggaataagttagtctcttccgtcactt-aacgtttaaagatttggattgacaatatgg 48462023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 6376387 - 6376529
Alignment:
Q  124 ttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc 223  Q
    |||||||||||| ||||||||||||||  ||||| |||||||||||||||| |||| ||||||  |||||| ||||| |||||| | |||||| || |||    
T  6376387 ttatgtttattttaggttttaagttggttctttatgttttaaaagttttaagttggtcccttaggttttaaaagtttcaagttgattcaaaacgtttctc 6376486  T
Q  224 -gattggaataagttagtatcttccttcacttgaccgtttaaa 265  Q
      ||| |||||||||||| ||||   ||||||| |||||||||    
T  6376487 acatttgaataagttagtctcttttgtcacttgtccgtttaaa 6376529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 24185667 - 24185836
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  |||| ||  ||||||||| |||||| ||||||| |||||| |||||||||||||| |||||| | ||||| ||||||  ||||    
T  24185667 ggtttaattgcatgtttggtcactcgtgtttattttaggtttcaagttggtcctttatgttttaaaagtttt-aattggtcacttatgttttaaaggttt 24185765  T
Q  201 taagttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaatattc 270  Q
     |||||||||||||  |||||||   ||| |||||||||||  ||||| | |||||||| |||||| ||||    
T  24185766 caagttggtccaaatatttactcacgttgaaataagttagtcccttccgttacttgaccttttaaagattc 24185836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 34535695 - 34535829
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||||||||||| |  |   ||||||||||||| ||  ||| ||||||  |||||| ||||||||    
T  34535695 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtctct---gttttaaaagtttcaagctggtcccttacgttttaaaagttttaa 34535791  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||| ||||||  ||||||||||||||||    
T  34535792 gttggtccaaaacgttactcatattggaataagttagt 34535829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 36469945 - 36469795
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | |||||||||||||||| || ||| || |||| ||||   |||||||||||||||| |||| ||||||  |||||| ||||| ||    
T  36469945 ttaattgcatgtttgatctcttatgtttattttag-tttcaaattggtccttcgtgttttaaaagttttaagttggtcccttacgttttaaaagtttcaa 36469847  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcactt 254  Q
    ||||||||||||  ||||||   ||||||||||||||| ||| || ||||||    
T  36469846 gttggtccaaaatgttactcacgttggaataagttagtctctcccatcactt 36469795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 34536097 - 34535912
Alignment:
Q  102 gtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagtttt 201  Q
    ||||||||||||||  | || ||||||||||| | || ||||||||||| || |||| ||||||||||||||| |||| | ||||  |||||  |||||     
T  34536097 gtttaattgcatgtttgatcccttatgtttatcttagtttttaagttggtcccttacattttaaaagttttaagttggtctcttacgttttagaagtttc 34535998  T
Q  202 aagttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatggat 287  Q
    |||||| || ||||| ||||||   |||||||||||||||  ||||  |||||| | ||||| || |||||| |||| |||||||||    
T  34535997 aagttgatcaaaaacgttactcacgttggaataagttagtcccttcggtcactt-aacgtttgaagattcgggttgacaatatggat 34535912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 10018013 - 10017937
Alignment:
Q  96 ttttgggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagtttt 172  Q
    |||| |||||||||| ||||  |||||||||||||||||| |||||||||||||| |  ||| ||||||||||||||    
T  10018013 ttttaggtttaattgtatgtttggtctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttt 10017937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 48461809 - 48461912
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaacttt 219  Q
    |||||||||||| ||| || ||||||||||  |||||| |||||||||||||||| |||| | ||||  |||||| ||| | |||||| |||||||| ||    
T  48461809 tctcttatgtttgttttagtttttaagttgatcctttatgttttaaaagttttaagttggtctcttacgttttaaaagtatgaagttgatccaaaacgtt 48461908  T
Q  220 actc 223  Q
    ||||    
T  48461909 actc 48461912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 22566304 - 22566421
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || |||||| |||| || ||| ||||||||||||| || |||| ||||||  |||||| |||||       
T  22566304 ttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagttt--c 22566401  T
Q  204 gttggtccaaaactttactc 223  Q
    ||||||||||||| ||||||    
T  22566402 gttggtccaaaacgttactc 22566421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 43510881 - 43510992
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    |||||| |||||  |||||||||||||||||||| ||||||||||    | ||| ||||||||||||| || || ||  ||||||||||||  |||| ||    
T  43510881 ttaattacatgtttggtctcttatgtttatttcaagttttaagttaattcattatgttttaaaagtttcaagtt-gattcttatattttaaatgtttcaa 43510979  T
Q  204 gttggtccaaaac 216  Q
    |||||||||||||    
T  43510980 gttggtccaaaac 43510992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 8560686 - 8560767
Alignment:
Q  160 ttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||||| |||| ||| || ||||||| ||||| | ||||||||||||| ||||||  |||| |||||||||||    
T  8560686 ttttaaaagttttaagttggtcccctacattttaaaagtttcatgttggtccaaaacgttactcacattgtaataagttagt 8560767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 17813993 - 17814052
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattgg 179  Q
    |||||||||||||||| |||||| ||||||| |  ||| ||||||||||||| |||||||    
T  17813993 tctcttatgtttattttaggtttcaagttggtctcttatgttttaaaagtttcaaattgg 17814052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 6376751 - 6376702
Alignment:
Q  124 ttatgtttatttcaggttttaagttggacctttacgttttaaaagtttta 173  Q
    |||||||||||| |||||||||||||| | |||| |||||||||| ||||    
T  6376751 ttatgtttattttaggttttaagttggtcatttatgttttaaaagcttta 6376702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 7460591 - 7460684
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaac 216  Q
    ||||||||||||| || ||| ||||||  || ||| ||||||||| ||| || |||| ||||||  |||||| | ||| |||||||||||||||    
T  7460591 cttatgtttattttagttttcaagttgatcccttatgttttaaaaatttcaagttggtcccttacgttttaaaaatttcaagttggtccaaaac 7460684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 7460954 - 7460878
Alignment:
Q  103 tttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattgg 179  Q
    |||||||||||||  | || ||||||||||||| || ||| ||||||| |  ||| ||||||||||||| |||||||    
T  7460954 tttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcacttatgttttaaaagtttcaaattgg 7460878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 9998054 - 9997902
Alignment:
Q  96 ttttgggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaag 195  Q
    |||| |||||||||  ||||  |||||||||||||||||  |||||||| ||||| || ||| |||||||| ||| | | || | | ||||| ||||||     
T  9998054 ttttaggtttaattatatgtttggtctcttatgtttattataggttttaggttggtcccttatgttttaaatgttgttagttcgtctcttatgttttaaa 9997955  T
Q  196 agttttaagttggtccaaaactttactc-gattggaataagttagtatcttcc 247  Q
    ||||| ||||| ||| ||||   |||||  |||| ||||| ||||||||||||    
T  9997954 agtttcaagttagtcgaaaaaaatactcacattgaaataaattagtatcttcc 9997902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 63135 - 62984
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || |||||| |||| |||| | ||||||||||||| || |||| |||||| ||||||| ||||| |     
T  63135 ttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacattttaaaagtttcag 63036  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcactt 254  Q
    ||||||||||||| ||||||   ||||||||||||||| |||||| ||||||    
T  63035 gttggtccaaaacgttactcactttggaataagttagtctcttccgtcactt 62984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 62782 - 62871
Alignment:
Q  159 gttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagtatcttcc 247  Q
    ||||||||||||| || ||   ||||||  |||||| ||||||||||||||||||||| ||||||   ||||||||||||||| ||||||    
T  62782 gttttaaaagtttcaagttaatcccttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataagttagtctcttcc 62871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 32629061 - 32629183
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    ||||||||| |||||  | || ||||||||||||| |||||||||||| |||||||| ||||||||| |||||| |||| |||||| |||||||  ||||    
T  32629061 ggtttaattacatgtttgatcccttatgtttattttaggttttaagttagacctttatgttttaaaaattttaagttggtcccttacattttaaaggttt 32629160  T
Q  201 taagttggtccaaaactttactc 223  Q
     ||||| ||||||||| ||||||    
T  32629161 caagttagtccaaaacgttactc 32629183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 32629439 - 32629300
Alignment:
Q  127 tgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-ga 225  Q
    |||||||||  ||||||||||||| | |||| |||||||||||||| | |||| |||||||||||||| | ||| ||||| || |||||| |||| |  |    
T  32629439 tgtttatttttggttttaagttggtcttttatgttttaaaagttttgagttggtcccttatattttaaaaatttcaagttcgttcaaaacgttacccaca 32629340  T
Q  226 ttggaataagttagtatcttccttcacttgaccgtttaaa 265  Q
    ||| ||||||||||| |||||| ||| || ||||||||||    
T  32629339 ttgtaataagttagtctcttccgtcatttaaccgtttaaa 32629300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 10567483 - 10567607
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||| || |||| || ||||||||||||||||| || |||| ||||||  |||||| ||||| |||||||| |||||| |||||    
T  10567483 cttatgtttattttagttttcaaattggtcccttacgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggttcaaaacgttact 10567582  T
Q  223 c-gattggaataagttagtatcttc 246  Q
    |  |||| ||||||||||| |||||    
T  10567583 cacattgaaataagttagtctcttc 10567607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 34829967 - 34829850
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | |||||||||||||||| |||||||||||||| |  ||| ||||||||||||| |  |||| ||||||  ||||||  |||| ||    
T  34829967 ttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcatgttggtcccttacgttttaaaggtttcaa 34829868  T
Q  204 gttggtccaaaactttac 221  Q
    |||||| |||||| ||||    
T  34829867 gttggttcaaaacgttac 34829850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 22793321 - 22793401
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||| |||||| ||||||| || ||| ||||||||||||| || |||| ||||||| |||||| ||||||||    
T  22793321 cttatgtttattttaggtttcaagttggtcccttatgttttaaaagtttcaagttggtcccttatgttttaaaagttttaa 22793401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 6611636 - 6611749
Alignment:
Q  128 gtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gat 226  Q
    |||||||| |||||| | ||||| || ||| ||||||||||||| || |||| |||| || |||||| ||||| |||||||| |||||| || |||  ||    
T  6611636 gtttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttggtccctcatgttttaaaagtttcaagttggttcaaaacgttgctctaat 6611735  T
Q  227 tggaataagttagt 240  Q
    ||||||||||||||    
T  6611736 tggaataagttagt 6611749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 6612049 - 6611937
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | | |||||||||||||| || ||||||||||  || ||  ||||||||||||| || |||| ||||||  ||||||  |||| ||    
T  6612049 ttaattgcatgtttgatgtcttatgtttattttagattttaagttgatcccttgtgttttaaaagtttcaagttggtcccttacgttttaaatgtttcaa 6611950  T
Q  204 gttggtccaaaac 216  Q
    |||||||||||||    
T  6611949 gttggtccaaaac 6611937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 10567818 - 10567722
Alignment:
Q  159 gttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagtatcttccttcactt 254  Q
    ||||||| ||||| || |||| ||||||  |||||| ||||| ||||||||||||||| ||||||   ||||||||||||||| |||||| ||||||    
T  10567818 gttttaagagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacattactcacgttggaataagttagtctcttccgtcactt 10567722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 22793679 - 22793612
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    ||||||||||||  | || ||||||||||||| |||||| ||||||| || |||||||||||||||||    
T  22793679 ttaattgcatgtttgatcccttatgtttattttaggtttcaagttggtcccttacgttttaaaagttt 22793612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 28613232 - 28613311
Alignment:
Q  169 ttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagtatcttcc 247  Q
    |||||| |||| ||||||  |||||| |||| |||||||||||||||| ||||||  |||||||||||||||| ||||||    
T  28613232 ttttaagttggtcccttacgttttaaaagttgtaagttggtccaaaacgttactcatattggaataagttagtctcttcc 28613311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 6210362 - 6210292
Alignment:
Q  103 tttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagtttta 173  Q
    |||||||| |||| | ||||||||||||||||| || |||||||||||  | ||| |||||||||||||||    
T  6210362 tttaattgtatgttcagtctcttatgtttattttagattttaagttggtgccttatgttttaaaagtttta 6210292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 2341581 - 2341617
Alignment:
Q  13 aaaattagagggagggacaaatactaactaaaatatt 49  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2341581 aaaattagagggagcgacaaatactaactaaaatatt 2341617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 28613559 - 28613428
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaac-tttac 221  Q
    ||||||||||||| |  |||||| |||| ||||   ||||||||| ||| || |||| ||||||  |||||| ||||| ||||||||| ||||| ||| |    
T  28613559 cttatgtttattttaatttttaaattggtccttcttgttttaaaaatttcaagttggtcccttacgttttaaaagtttcaagttggtcaaaaacgttttc 28613460  T
Q  222 tcgattggaataagttagtatcttccttcactt 254  Q
    || |||||||||||||||| | |||| ||||||    
T  28613459 tc-attggaataagttagtcttttccgtcactt 28613428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 17342910 - 17343008
Alignment:
Q  125 tatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc 223  Q
    ||||||||||| |||||| ||||||| || ||| ||||||||| ||| || |||| |  |||  |||||| ||||| || |||||||||||| ||||||    
T  17342910 tatgtttattttaggtttcaagttggtcccttatgttttaaaaatttcaagttggtcttttacgttttaaaagtttcaaattggtccaaaacgttactc 17343008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 17343210 - 17343136
Alignment:
Q  190 tttaagagttttaagttggtccaaaactttactcga-ttggaataagttagtatcttccttcacttgaccgttta 263  Q
    ||||| ||||| ||||||||||||||  ||||||   || |||||||||||| |||||| |||||||||||||||    
T  17343210 tttaaaagtttcaagttggtccaaaatgttactcaccttagaataagttagtctcttccatcacttgaccgttta 17343136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 29674929 - 29674990
Alignment:
Q  155 ttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaac 216  Q
    ||||||||||||||||| || |||| ||||||  |||||| ||||| |||||| ||||||||    
T  29674929 ttacgttttaaaagtttcaagttggtcccttaagttttaaaagtttcaagttgatccaaaac 29674990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 11122293 - 11122245
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    ||||||||||||| ||||| |||||||| | |||| |||||||||||||    
T  11122293 cttatgtttattttaggttgtaagttggtcatttatgttttaaaagttt 11122245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 28613215 - 28613271
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattgg 179  Q
    ||||| ||||||| || ||||||||||| || |||||||||||||||| ||| ||||    
T  28613215 cttatatttattttagtttttaagttggtcccttacgttttaaaagttgtaagttgg 28613271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 29674868 - 29674956
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtcc 211  Q
    |||||||||| || |||||| ||||||| || |||  |||||||||||| || ||||  |||||  |||||| ||||| ||||||||||    
T  29674868 cttatgtttaatttaggtttcaagttggtcccttatattttaaaagtttcaagttggttccttacgttttaaaagtttcaagttggtcc 29674956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 29675159 - 29675119
Alignment:
Q  225 attggaataagttagtatcttccttcacttgaccgtttaaa 265  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  29675159 attggaataagttagttccttccgtcacttgaccgtttaaa 29675119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 33992747 - 33992628
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || |||||| |||| |||||| |||||||||||||||||||||  |||||  |||||| ||||||||    
T  33992747 ttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcctttatgttttaaaagttttaaattggttccttacgttttaaaagttttaa 33992648  T
Q  204 gttggtccaaaactttactc 223  Q
     ||||| |||||| ||||||    
T  33992647 attggttcaaaacgttactc 33992628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 25508219 - 25508097
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  |||| |||| ||| |||| |||||||||||||  || ||| ||||||||||||| || || | || |||||||||   |||||    
T  25508219 ggtttaattgcatgtttggtcccttaagttgattttaggttttaagttgctcccttatgttttaaaagtttcaagttcgtcctttatatttttttagttt 25508120  T
Q  201 taagttggtccaaaactttactc 223  Q
    |||||||||||||||| ||||||    
T  25508119 taagttggtccaaaacgttactc 25508097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 19935435 - 19935552
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  ||||||||||||||||||  ||||||||||||| || ||| |||||| || ||| || |||| |||| || |||||| || || ||    
T  19935435 ttaattgcatgttgggtctcttatgtttatttttggttttaagttggtccattatgttttataaatttcaagttggtccctgatgttttaaaag-ttcaa 19935533  T
Q  204 gttggtccaaaactttact 222  Q
    ||||||||||||| |||||    
T  19935534 gttggtccaaaacattact 19935552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 284
Target Start/End: Original strand, 33992336 - 33992516
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| ||||| | || ||| |||||| |||||||||||||| ||||||  |||||| ||||| ||    
T  33992336 ttaattgcatgtttgatcccttatgtttattttagttttcaagttcgtcccttatgttttataagttttaaattggtcccttacgttttaaaagtttcaa 33992435  T
Q  204 gttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatg 284  Q
    |||||| |||||| ||| ||   ||| ||||||||||| | ||||  ||||| | |||||||| ||| ||||||| ||||||    
T  33992436 gttggttcaaaacgttattcacgttgaaataagttagtctattccaccactt-aacgtttaaagatttggattgacaatatg 33992516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 34065368 - 34065285
Alignment:
Q  140 ttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc 223  Q
    ||||||||||| |  ||| |||||||||||||||| |||| |||||||||||||| ||||| ||||||||  ||||| ||||||    
T  34065368 ttttaagttggtctcttatgttttaaaagttttaagttggtcccttatattttaaaagtttaaagttggttaaaaacgttactc 34065285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 16643077 - 16642995
Alignment:
Q  184 ttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagtatcttccttcacttgaccgtttaaa 265  Q
    ||||||||||| ||||| |||||| | | |||  |||||| ||||| ||||||||||| |||||| |||||||||||||||||    
T  16643077 ttatattttaaaagtttcaagttgcttctaaatgttactcagattgaaataagttagtctcttccgtcacttgaccgtttaaa 16642995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 16643131 - 16643061
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    |||||||||| ||||  ||||||||| || ||||| |||||||| ||||| ||||||  ||||||||||||    
T  16643131 ggtttaattgtatgtttggtctcttacgtgtattttaggttttatgttggtcctttatattttaaaagttt 16643061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 19328406 - 19328478
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagtttta 173  Q
    ||||||||||||||   | || ||||||||||||| || ||||||||||| ||||||  |||||||| |||||    
T  19328406 ggtttaattgcatgattgatcccttatgtttattttagtttttaagttggtcctttatattttaaaaatttta 19328478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 41563800 - 41563832
Alignment:
Q  185 tatattttaagagttttaagttggtccaaaact 217  Q
    |||||||||| ||||||||||||||||||||||    
T  41563800 tatattttaaaagttttaagttggtccaaaact 41563832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 54341201 - 54341355
Alignment:
Q  101 ggtttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttt 200  Q
    |||||||||||||||  | || ||||||||||||| ||  ||||| |||| | || | |||||||||||||||| |||| ||||||  |||||| |||||    
T  54341201 ggtttaattgcatgtttgatcccttatgtttattttagtatttaaattggtcgttcatgttttaaaagttttaagttggtcccttacgttttaaaagttt 54341300  T
Q  201 taagttggtccaaaactttactc-gattggaataagttagtatcttccttcactt 254  Q
     ||||||||||||||| ||||||   ||||||||||| ||| |||||| ||||||    
T  54341301 caagttggtccaaaacgttactcacgttggaataagtcagtctcttccgtcactt 54341355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 285
Target Start/End: Original strand, 19540851 - 19541007
Alignment:
Q  130 ttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattg 228  Q
    |||||| |||||||||||||| || ||| |||||||||||||||  |||| || |||| |||||| |||||||| ||||| |||||| ||||||  |||     
T  19540851 ttattttaggttttaagttggtcccttatgttttaaaagttttatgttggtcctttatgttttaacagttttaaattggttcaaaacgttactcacatta 19540950  T
Q  229 gaataagttagtatcttccttcacttgaccgtttaaatattcggattgataatatgg 285  Q
    ||||||||||||   ||   ||||||||||||||||| |||| | |||| |||||||    
T  19540951 gaataagttagttcattttgtcacttgaccgtttaaagattcaggttgacaatatgg 19541007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 51388151 - 51388051
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| || ||||||||||| |  ||| |||||||||||||||| |||  |||||| ||||||| |||||||| |||||||||||| |||||    
T  51388151 cttatgtttattttagtttttaagttggtctcttatgttttaaaagttttaagttgatcccttacattttaaaagttttaaattggtccaaaacgttact 51388052  T
Q  223 c 223  Q
    |    
T  51388051 c 51388051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 33241847 - 33241959
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    |||||||||||   |||| |||| |||||||| |||||| ||||||  || ||| |||||||||||||||| ||||  ||||||||||||| ||||| ||    
T  33241847 ttaattgcatggttggtcccttaagtttattttaggtttcaagttgttcccttatgttttaaaagttttaatttggttccttatattttaaaagtttcaa 33241946  T
Q  204 gttggtccaaaac 216  Q
     ||||||||||||    
T  33241947 attggtccaaaac 33241959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 48618500 - 48618600
Alignment:
Q  123 cttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact 222  Q
    ||||||||||||| ||||||||| ||||   |||| |||||||||||||||||||||  |||||| |||||| | ||| |||||||| |||||| |||||    
T  48618500 cttatgtttattttaggttttaaattggttatttatgttttaaaagttttaaattggttccttatgttttaacaatttcaagttggttcaaaacgttact 48618599  T
Q  223 c 223  Q
    |    
T  48618600 c 48618600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 33419597 - 33419685
Alignment:
Q  160 ttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc-gattggaataagttagtatcttcc 247  Q
    ||||||||||||||| |||| ||||||  |||||| ||||| ||||||||||||||| ||||||  |||| ||||||||||| ||||||    
T  33419597 ttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagttagtctcttcc 33419685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 37285938 - 37285822
Alignment:
Q  125 tatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttactc- 223  Q
    ||||||||||| |||||||||||||| || |||  |||||||||||| || |||  || ||||||||||| | ||| |||||||| |||||| ||||||     
T  37285938 tatgtttattttaggttttaagttggtcccttatattttaaaagtttcaagttgaccctttatattttaaaaatttcaagttggttcaaaacgttactca 37285839  T
Q  224 gattggaataagttagt 240  Q
     |||| |||||||||||    
T  37285838 cattgaaataagttagt 37285822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 33419953 - 33419834
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| |  ||||||||||| || ||| ||||||||||||| ||  ||| ||||||  |||||| ||||||||    
T  33419953 ttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgttttaaaagtttcaagatggtcccttacgttttaaaagttttaa 33419854  T
Q  204 gttggtccaaaactttactc 223  Q
    ||||| | ||||| ||||||    
T  33419853 gttggactaaaacgttactc 33419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 30547756 - 30547846
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaagttggtcc 211  Q
    |||||||||||||||| |  ||||| ||||| |  ||| |||||||||||||||| |||| ||||||  ||||||  |||||||||||||||    
T  30547756 tctcttatgtttattttaa-ttttaggttggtcgcttatgttttaaaagttttaagttggtcccttactttttaaaggttttaagttggtcc 30547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 33419577 - 33419619
Alignment:
Q  169 ttttaaattggacccttatattttaagagttttaagttggtcc 211  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||    
T  33419577 ttttaaattggccccttatcttttaaaagttttaagttggtcc 33419619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 7015684 - 7015590
Alignment:
Q  159 gttttaaaagttttaaattggacccttatattttaagagttttaagttggtccaaaactttact--cgattggaataagttagtatcttccttcac 252  Q
    ||||||||| |||||| |||| || ||||||||| | ||||||||||| ||| ||||  |||||  || ||||||||||||||| |||||| ||||    
T  7015684 gttttaaaaattttaagttggccctttatattttgaaagttttaagtttgtctaaaatgttacttacg-ttggaataagttagtctcttccgtcac 7015590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 3443 - 3306
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggacccttatattttaagagttttaa 203  Q
    ||||||||||||  | || ||||||||||||| || ||| ||||||| || ||| ||||||||||||| || |||| ||||||  |||||| ||||| ||    
T  3443 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaa 3344  T
Q  204 gttggtccaaaactttactc-gattggaataagttagt 240  Q
    ||||||||||||| ||||||   |||||||||||||||    
T  3343 gttggtccaaaacgttactcactttggaataagttagt 3306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 9984 - 9917
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    ||||||||||||  | |||||||||||||||| |||||||||||||| |  ||| |||||||||||||    
T  9984 ttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagttt 9917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 9596 - 9662
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggaccctta 186  Q
    |||||||||||||||| |  ||||||| ||| || ||| ||||||||||||| ||||||| ||||||    
T  9596 tctcttatgtttattttaatttttaagatggtcccttatgttttaaaagtttcaaattggtccctta 9662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 10627 - 10560
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    ||||||||||||  | |||||||||||||||| |||||||||||||| |  ||| |||||||||||||    
T  10627 ttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagttt 10560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 10239 - 10305
Alignment:
Q  120 tctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttttaaattggaccctta 186  Q
    |||||||||||||||| |  ||||||| ||| || ||| ||||||||||||| ||||||| ||||||    
T  10239 tctcttatgtttattttaatttttaagatggtcccttatgttttaaaagtttcaaattggtccctta 10305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 47487 - 47420
Alignment:
Q  104 ttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttacgttttaaaagttt 171  Q
    ||||||||||||  |||| ||||||||||||| |||||||||||||| |  ||| |||||||||||||    
T  47487 ttaattgcatgtttggtcccttatgtttattttaggttttaagttggtcgcttatgttttaaaagttt 47420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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