View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_46 (Length: 256)

Name: NF6625_low_46
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_46
NF6625_low_46
[»] chr6 (1 HSPs)
chr6 (15-236)||(5929490-5929711)
[»] chr3 (4 HSPs)
chr3 (205-237)||(10852744-10852776)
chr3 (206-237)||(7012679-7012710)
chr3 (206-237)||(23918881-23918912)
chr3 (206-237)||(42644301-42644332)
[»] chr8 (2 HSPs)
chr8 (206-237)||(19649233-19649264)
chr8 (206-237)||(38516345-38516376)
[»] chr5 (3 HSPs)
chr5 (206-237)||(22811079-22811110)
chr5 (207-237)||(5969975-5970005)
chr5 (207-237)||(7667752-7667782)
[»] chr4 (2 HSPs)
chr4 (206-237)||(17898087-17898118)
chr4 (206-237)||(36150628-36150659)
[»] chr2 (3 HSPs)
chr2 (206-237)||(10918651-10918682)
chr2 (206-237)||(15220820-15220851)
chr2 (206-237)||(23359959-23359990)
[»] chr1 (2 HSPs)
chr1 (206-237)||(4347037-4347068)
chr1 (207-237)||(7335911-7335941)
[»] chr7 (2 HSPs)
chr7 (206-235)||(29829330-29829359)
chr7 (207-235)||(44570701-44570729)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 5929490 - 5929711
Alignment:
Q  15 aatatcaaagccactgaatgtgatcacatgtgtcgatgttattttcagacatcaacacacaaacacactttcaaactgaactgtatgcttggttcaactt 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5929490 aatatcaaagccactgaatgtgatcacatgtgtcgatgttatgttcagacatcaacacacagacacactttcaaactgaactgtatgcttggttcaactt 5929589  T
Q  115 ttgcaggtgctaaaattgatttgacgtggaaaattggttttgaacttttgagcttttgattctagaactgattttacataaatgtttggtgccaaacata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5929590 ttgcaggtgctaaaattgatttgacgtggaaaattggttttgaacttttgagcttttgattctagaactgattttacataaatgtttggtgccaaacata 5929689  T
Q  215 aatcactttacattcaactcac 236  Q
    ||||||||||||||||||||||    
T  5929690 aatcactttacattcaactcac 5929711  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 10852776 - 10852744
Alignment:
Q  205 gccaaacataaatcactttacattcaactcact 237  Q
    |||||||||||||||||||||||||||||||||    
T  10852776 gccaaacataaatcactttacattcaactcact 10852744  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 7012679 - 7012710
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  7012679 ccaaacataaatcactttacattcaactcact 7012710  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 23918881 - 23918912
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  23918881 ccaaacataaatcactttacattcaactcact 23918912  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 42644301 - 42644332
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  42644301 ccaaacataaatcactttacattcaactcact 42644332  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 19649233 - 19649264
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  19649233 ccaaacataaatcactttacattcaactcact 19649264  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 38516345 - 38516376
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  38516345 ccaaacataaatcactttacattcaactcact 38516376  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 22811079 - 22811110
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  22811079 ccaaacataaatcactttacattcaactcact 22811110  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 5970005 - 5969975
Alignment:
Q  207 caaacataaatcactttacattcaactcact 237  Q
    |||||||||||||||||||||||||||||||    
T  5970005 caaacataaatcactttacattcaactcact 5969975  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 7667752 - 7667782
Alignment:
Q  207 caaacataaatcactttacattcaactcact 237  Q
    |||||||||||||||||||||||||||||||    
T  7667752 caaacataaatcactttacattcaactcact 7667782  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 17898118 - 17898087
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  17898118 ccaaacataaatcactttacattcaactcact 17898087  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 36150628 - 36150659
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  36150628 ccaaacataaatcactttacattcaactcact 36150659  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 10918651 - 10918682
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  10918651 ccaaacataaatcactttacattcaactcact 10918682  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 15220851 - 15220820
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  15220851 ccaaacataaatcactttacattcaactcact 15220820  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 23359990 - 23359959
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  23359990 ccaaacataaatcactttacattcaactcact 23359959  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 4347037 - 4347068
Alignment:
Q  206 ccaaacataaatcactttacattcaactcact 237  Q
    ||||||||||||||||||||||||||||||||    
T  4347037 ccaaacataaatcactttacattcaactcact 4347068  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 7335941 - 7335911
Alignment:
Q  207 caaacataaatcactttacattcaactcact 237  Q
    |||||||||||||||||||||||||||||||    
T  7335941 caaacataaatcactttacattcaactcact 7335911  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 29829359 - 29829330
Alignment:
Q  206 ccaaacataaatcactttacattcaactca 235  Q
    ||||||||||||||||||||||||||||||    
T  29829359 ccaaacataaatcactttacattcaactca 29829330  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 44570729 - 44570701
Alignment:
Q  207 caaacataaatcactttacattcaactca 235  Q
    |||||||||||||||||||||||||||||    
T  44570729 caaacataaatcactttacattcaactca 44570701  T

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