View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_47 (Length: 251)
Name: NF6625_low_47
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3254378 - 3254623
Alignment:
| Q |
1 |
tgctatttagtagaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactctttagttttcctttcttaaaaat |
100 |
Q |
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| T |
3254378 |
tgctatttagtcgaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactctttagttttcctttcttaaaaat |
3254477 |
T |
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| Q |
101 |
atttgttagacccaagtatatatatgaaggtggcctaggaat-----------aagaaaccaacacatgtctccttgagaagctagtttgggatatgttt |
189 |
Q |
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| T |
3254478 |
atttgttagacccaag------tatgaaggtggcctaggaatcagaacagccagagaaaccaacacatgtctccttgagaagctagtttgggatatgttc |
3254571 |
T |
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| Q |
190 |
caatattctaataaattatgggttgatctcctctccgataagtatgatgatg |
241 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3254572 |
caatcttctaataaattatgggttgatctcctctccgataagtatgatgatg |
3254623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 3274011 - 3274055
Alignment:
| Q |
30 |
ttgttgttgttattttgtaatttctctttcctattttttccaaca |
74 |
Q |
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| T |
3274011 |
ttgttgttgatgtgttgtaatttctctttcctaatttttccaaca |
3274055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 24872946 - 24872993
Alignment:
| Q |
169 |
aagctagtttgggatatgtttcaatattctaataaattatgggttgat |
216 |
Q |
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| T |
24872946 |
aagcttgtttgggatatggttcaatattcaaagaaattatgggttgat |
24872993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 12645343 - 12645266
Alignment:
| Q |
157 |
tgtctccttgagaagctagtttgggatatgtttcaatattctaataaattatgggttgatctcctctccgataagtat |
234 |
Q |
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||||||||| |||||||||||||||||| | |||| || || |||||||||||||||||||| || || |||||| |
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| T |
12645343 |
tgtctcctttggaagctagtttgggatattgtccaatgctccaaaaaattatgggttgatctcctttctgacaagtat |
12645266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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