View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_50 (Length: 242)

Name: NF6625_low_50
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_50
NF6625_low_50
[»] chr3 (15 HSPs)
chr3 (1-225)||(13852843-13853067)
chr3 (2-225)||(10503045-10503268)
chr3 (1-192)||(10373224-10373415)
chr3 (1-197)||(10361183-10361379)
chr3 (51-169)||(10531180-10531298)
chr3 (1-225)||(10519948-10520172)
chr3 (1-184)||(9852243-9852426)
chr3 (52-142)||(11021898-11021988)
chr3 (1-225)||(10034466-10034690)
chr3 (51-169)||(10679979-10680097)
chr3 (1-194)||(10263195-10263388)
chr3 (1-184)||(10431423-10431606)
chr3 (1-114)||(10129496-10129609)
chr3 (53-114)||(11771808-11771869)
chr3 (159-200)||(11779522-11779563)
[»] chr2 (1 HSPs)
chr2 (1-192)||(26909384-26909575)
[»] chr8 (2 HSPs)
chr8 (52-184)||(11487533-11487665)
chr8 (52-225)||(44955092-44955265)
[»] chr4 (1 HSPs)
chr4 (52-121)||(17850359-17850428)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13852843 - 13853067
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  13852843 tagacaaactccttcacaaaatgacaactctcgacattccaagtccaaccgttcaagagcggtaagcgtgtccatccgaagcttcactttaagtgatcca 13852942  T
Q  101 attgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcactta 200  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13852943 attgagtcatgggatttgattacaagtgtttggagtcttgacggtcgacttggaggactttctaaaatattaatggaatccagattcctacactcactta 13853042  T
Q  201 tcagaagtctttggagtgcagggaa 225  Q
    || ||||||||||||||||||||||    
T  13853043 tccgaagtctttggagtgcagggaa 13853067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 10503268 - 10503045
Alignment:
Q  2 agacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaa 101  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||  ||||||||| || || |||| |||| ||||||| |||| ||||||| |||    
T  10503268 agacaaactccttcacaaaatgataactcctgacaatccaagtccaactcttcaagagccgtgagcgtgttcatctgaagcttgacttcaaatgattcaa 10503169  T
Q  102 ttgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttat 201  Q
     ||| |||||||| | |||   ||||| ||||||||| ||   |   |||  |||||||| |||| ||  ||||||||||| ||||||||| | ||| ||    
T  10503168 ctgaatcatgggattggatatgaagtgattggaggctcgaatattggtgtaaaggactttttaaagtaaaaatggaatccaaattcctacagttactaat 10503069  T
Q  202 cagaagtctttggagtgcagggaa 225  Q
       |||||||||||||||||||||    
T  10503068 gttaagtctttggagtgcagggaa 10503045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 10373224 - 10373415
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||   ||||| |||||||||||| ||  ||||||||  |||||| |||| |||| || ||    
T  10373224 tagacaaactccttcacaaaatgacaactctcgacatcccaaactcaacctttcaagagcggtgagcatgtccatcttaagcttgacttcaaataattca 10373323  T
Q  101 attgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctaca 192  Q
    |||||  |||||||   |||   ||||| || |||||| ||||  | | ||| |||||||||| |||||  |||||||||||||||||||||    
T  10373324 attgaagcatgggagaagatctgaagtgattcgaggctcgacgaccgaggtgaaggactttctgaaatacaaatggaatccagattcctaca 10373415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 10361183 - 10361379
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattcca-agtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcc 99  Q
    ||||||||||||||||||||| || |||||| | || || | |||| |||||||||||||||| ||| |||||||||  |||||| |||| |||| || |    
T  10361183 tagacaaactccttcacaaaacgacaactctggccaatctagagtc-aaccgttcaagagcggcaagcgtgtccatcttaagcttgacttcaaataattc 10361281  T
Q  100 aattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcac 197  Q
    |||||| ||||||||  |||||| ||||| || |||||| ||||  | | ||| ||  |||||| |||||| ||||||||||||| ||||||| ||||    
T  10361282 aattgaatcatgggatatgattataagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctacaatcac 10361379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 10531298 - 10531180
Alignment:
Q  51 gttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatg 150  Q
    |||||||||| || || ||||||||||||||||| |||||||   |||||||||| |||||||| ||||||  ||||| | |||||||||| |  | | |    
T  10531298 gttcaagagcagtgagcgtgtccatccgaagcttgactttaagcaatccaattgaatcatgggatttgattttaagtgatcggaggcttgatgaccgacg 10531199  T
Q  151 tggaggactttctaaaata 169  Q
    ||||||||||||| |||||    
T  10531198 tggaggactttctgaaata 10531180  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10520172 - 10519948
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattcca-agtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcc 99  Q
    |||||||||||||||||||||||| ||||||  ||| || | |||| |||| ||||||||| || ||  ||||||||  |||||| |||| |||| || |    
T  10520172 tagacaaactccttcacaaaatgacaactctacacaatctagagtc-aacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataattc 10520074  T
Q  100 aattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcactt 199  Q
    |||||| ||| ||||  ||||  |||||| || |||||| ||||  | | ||| ||  |||||| |||||| ||||||||||||| |||| ||||||| |    
T  10520073 aattgaatcaggggatatgatctcaagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctgcactcacat 10519974  T
Q  200 atcagaagtctttggagtgcagggaa 225  Q
    ||   |||| ||||||| ||||||||    
T  10519973 atggtaagtgtttggagcgcagggaa 10519948  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 9852426 - 9852243
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    |||||||||||||||| ||||||| |||| | | |||| ||  | |||   |||||||||||| ||  ||||||||  |||||| |||| |||| || ||    
T  9852426 tagacaaactccttcagaaaatgacaacttttggcatttcatatgcaaatcttcaagagcggtgagcatgtccatcttaagcttgacttcaaataattca 9852327  T
Q  101 attgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccaga 184  Q
    ||||| | |||||| |||||   ||||| ||||||||||||||  | | ||| ||  ||||||||||||| |||||||||||||    
T  9852326 attgaattatgggatttgatccgaagtgattggaggcttgacgaccgaggtgaagacctttctaaaatataaatggaatccaga 9852243  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 11021988 - 11021898
Alignment:
Q  52 ttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgac 142  Q
    ||||||||| || ||||||||||||||||  || ||||||| |||| ||||||||||||||||  |||||  ||||| | |||||||||||    
T  11021988 ttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgac 11021898  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10034690 - 10034466
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    |||||||||||||||||||||||| ||||||  |||||  |  | ||||| ||||||||| || ||  ||||||||  |||||| |||| |||| || ||    
T  10034690 tagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataattca 10034591  T
Q  101 attgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcactta 200  Q
    ||||| |||||||| | |||   ||||| || |||||| ||||  | | ||| ||  |||||| |||||| ||||||| ||||| ||||||| |  | ||    
T  10034590 attgaatcatgggattcgatatgaagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaaaccagactcctacaattccata 10034491  T
Q  201 tcagaagtctttggagtgcagggaa 225  Q
    || ||||| |||||||  |||||||    
T  10034490 tctgaagtgtttggaggacagggaa 10034466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 10680097 - 10679979
Alignment:
Q  51 gttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatg 150  Q
    |||||||||| || || ||||||||||||||||| |||||||    ||||||||| ||||| || ||||||  ||||| |||||||||| ||| |  |||    
T  10680097 gttcaagagcagtgagcgtgtccatccgaagcttgactttaagcagtccaattgaatcatgtgatttgattttaagtgattggaggcttaacgattgatg 10679998  T
Q  151 tggaggactttctaaaata 169  Q
    ||  ||||||||| |||||    
T  10679997 tgatggactttctgaaata 10679979  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 10263388 - 10263195
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    |||||||||||||||| ||||||| ||||||  ||||   |    ||||| |||||||||||| ||  | ||||||  |||||| |||| |||| || ||    
T  10263388 tagacaaactccttcagaaaatgacaactctgcacatgttagaaacaacctttcaagagcggtgagcatttccatcttaagcttgacttcaaataattca 10263289  T
Q  101 attgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacact 194  Q
    ||||| |||||||| |||||   ||||| || |||||| ||||  | | ||| ||  ||||||||||||| ||||||||||||| | |||||||    
T  10263288 attgaatcatgggatttgatagtaagtgattcgaggctcgacgaccgaggtgaagacctttctaaaatataaatggaatccagacttctacact 10263195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10431423 - 10431606
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    |||||||||||||||||||||||| | || | |||||| ||  | ||||  |||||||||||| ||  ||||||||  |||||| |||| |||| || ||    
T  10431423 tagacaaactccttcacaaaatgacagcttttgacatttcatatgcaacttttcaagagcggtgagcatgtccatcttaagcttgacttcaaataattca 10431522  T
Q  101 attgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccaga 184  Q
    ||||| | ||||||  ||||   ||||| || |||||| ||||  | | ||| ||  |||||| |||||| |||||||||||||    
T  10431523 attgaataatgggatctgatataaagtgattcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaatccaga 10431606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 10129609 - 10129496
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    |||||||||||||||||||||||| ||||||  |||||  |  | ||||| ||||||||| || ||  |||| |||  |||||| |||| |||| || ||    
T  10129609 tagacaaactccttcacaaaatgacaactctgcacattttagattcaacctttcaagagctgtgagcatgtcaatcttaagcttgacttcaaataattca 10129510  T
Q  101 attgagtcatggga 114  Q
    ||||| ||||||||    
T  10129509 attgaatcatggga 10129496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 11771869 - 11771808
Alignment:
Q  53 tcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatggga 114  Q
    |||||||||||||| | || |||||||||||| ||||||||  || ||||||| ||||||||    
T  11771869 tcaagagcggtaagcgagttcatccgaagcttgactttaaacaattcaattgaatcatggga 11771808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 11779522 - 11779563
Alignment:
Q  159 tttctaaaatattaatggaatccagattcctacactcactta 200  Q
    |||||||||||| ||||||||||||| ||||||| |||||||    
T  11779522 tttctaaaatataaatggaatccagactcctacaatcactta 11779563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 26909575 - 26909384
Alignment:
Q  1 tagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatcca 100  Q
    ||||||||| |||||||||||||| ||||||||||| ||||  | |||| |||||||| | || || ||||||||||||||||||||||||||| || ||    
T  26909575 tagacaaacaccttcacaaaatgacaactctcgacagtccagatacaactgttcaagatctgtgagcgtgtccatccgaagcttcactttaaataattca 26909476  T
Q  101 attgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctaca 192  Q
    ||||| |||||||| ||||||  ||||| ||  ||||||||||| | ||||| |||| ||||| |||||| ||||||||||| | |||||||    
T  26909475 attgaatcatgggatttgattttaagtgattcaaggcttgacggccgatgtgaaggagtttctgaaatataaatggaatccacactcctaca 26909384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 11487665 - 11487533
Alignment:
Q  52 ttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgt 151  Q
    ||||||||| || ||  ||||||||||||| || |||| || ||||||||||||||||||||| |||||| |||| | | ||||||||||||  | |  |    
T  11487665 ttcaagagcagtgagcatgtccatccgaagtttgacttgaagtgatccaattgagtcatgggatttgatttcaagagatcggaggcttgacgaccaacat 11487566  T
Q  152 ggaggactttctaaaatattaatggaatccaga 184  Q
    | ||||||||||||||||  |||||||||||||    
T  11487565 gaaggactttctaaaataaaaatggaatccaga 11487533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 44955092 - 44955265
Alignment:
Q  52 ttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgt 151  Q
    ||||||||| |||||||| ||||||||||| || ||||||| |||| ||||  ||||||||||  |||||  ||||| |   ||||||||||| | | ||    
T  44955092 ttcaagagcagtaagtgtatccatccgaagattgactttaagtgattcaataaagtcatgggatgtgattgtaagtgatcaaaggcttgacggccgaggt 44955191  T
Q  152 ggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaa 225  Q
    | ||||||||| |||||   ||| ||||||||| |||||||  |||| ||   ||||||||||||  |||||||    
T  44955192 gaaggactttccaaaatgaaaattgaatccagactcctacaaccactaatgttaagtctttggagcacagggaa 44955265  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 17850359 - 17850428
Alignment:
Q  52 ttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgatt 121  Q
    ||||||||| || ||||||||||| |||||||| |||||||  ||||||||||||| ||| || ||||||    
T  17850359 ttcaagagcagtgagtgtgtccattcgaagcttgactttaagagatccaattgagtaatgagatttgatt 17850428  T

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