View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6625_low_51 (Length: 242)

Name: NF6625_low_51
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6625_low_51
NF6625_low_51
[»] chr3 (1 HSPs)
chr3 (1-242)||(43361896-43362137)
[»] chr4 (4 HSPs)
chr4 (165-230)||(44360284-44360352)
chr4 (165-238)||(42285711-42285787)
chr4 (165-206)||(13262410-13262451)
chr4 (165-206)||(31961309-31961350)
[»] chr1 (2 HSPs)
chr1 (165-230)||(51584942-51585010)
chr1 (173-210)||(13578941-13578978)
[»] chr8 (2 HSPs)
chr8 (165-212)||(16351575-16351622)
chr8 (168-238)||(18473980-18474053)
[»] chr6 (2 HSPs)
chr6 (168-202)||(4245919-4245953)
chr6 (169-206)||(32949736-32949773)
[»] scaffold0006 (1 HSPs)
scaffold0006 (173-210)||(163233-163270)
[»] chr5 (1 HSPs)
chr5 (165-206)||(3442914-3442955)
[»] chr2 (4 HSPs)
chr2 (165-206)||(15025692-15025733)
chr2 (165-206)||(19334195-19334236)
chr2 (9-69)||(31807961-31808022)
chr2 (182-210)||(14225157-14225185)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43362137 - 43361896
Alignment:
Q  1 caattcccacccttgttcatctccctcacacaaaatcaaaaattttcttc-atcaagataaaatacatgaaccttaaacnnnnnnnnncagggatcctaa 99  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||         ||||||||||||    
T  43362137 caattctcacccttattcatctccctcacacaaaatcaaaaattttcttctatcaagaaaaaatacatgaaccttaaactttttttttcagggatcctaa 43362038  T
Q  100 ttgtccaaaatcccctcacaaacatacccttaacnnnnnnnnccagggatcctaattgtcttcctgacatggtttttgatagaacattatgacatcgttt 199  Q
    ||||||||||||||||||||||||||| ||||||        |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  43362037 ttgtccaaaatcccctcacaaacatactcttaacttttttt-ccagggatcctaattgtctttctgacatagtttttgatagaatattatgacatcgttt 43361939  T
Q  200 gattcatatagaccccacttaataggataagatttggttattg 242  Q
    ||||||||| ||||||||||||||||||||||||| |||||||    
T  43361938 gattcatattgaccccacttaataggataagatttagttattg 43361896  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 44360284 - 44360352
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcatata---gaccccacttaataggataag 230  Q
    |||| |||||||||||||||| |||||| ||||||||||||| ||   |||||||||||||||||||||    
T  44360284 gacacggtttttgatagaacactatgacgtcgtttgattcatgtagccgaccccacttaataggataag 44360352  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 42285787 - 42285711
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcatatag---accccacttaataggataagatttggtt 238  Q
    ||||||||||||||||||| | |||| ||| ||||||||||| |||   |||||||||| | |||||||| ||||||    
T  42285787 gacatggtttttgatagaatactatggcattgtttgattcatgtagccaaccccacttagttggataagacttggtt 42285711  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 13262410 - 13262451
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcat 206  Q
    ||||||||||||||||||| | |||||| |||||||||||||    
T  13262410 gacatggtttttgatagaaaactatgacgtcgtttgattcat 13262451  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 31961350 - 31961309
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcat 206  Q
    ||||||||| ||||||||||| |||||| |||||||||||||    
T  31961350 gacatggttgttgatagaacactatgacgtcgtttgattcat 31961309  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 51584942 - 51585010
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcatat---agaccccacttaataggataag 230  Q
    ||||| ||||||||||||||| |||||||| ||||||||||| |   |||||||||||| |||||||||    
T  51584942 gacattgtttttgatagaacactatgacattgtttgattcatgtagcagaccccacttagtaggataag 51585010  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 13578978 - 13578941
Alignment:
Q  173 ttttgatagaacattatgacatcgtttgattcatatag 210  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  13578978 ttttgatagaacactatgacgtcgtttgattcatatag 13578941  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 16351575 - 16351622
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcatatagac 212  Q
    |||||||||||| |||||||| |||| ||||||||||||||| |||||    
T  16351575 gacatggtttttaatagaacactatggcatcgtttgattcatgtagac 16351622  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 18474053 - 18473980
Alignment:
Q  168 atggtttttgatagaacattatgacatcgtttgattcatata---gaccccacttaataggataagatttggtt 238  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||   ||| ||||||| | |||||||| ||||||    
T  18474053 atggtatttgatagaacattatgacttcgtttgattcatgtagccgacaccacttagtgggataagacttggtt 18473980  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 4245953 - 4245919
Alignment:
Q  168 atggtttttgatagaacattatgacatcgtttgat 202  Q
    ||||| |||||||||||||||||||||||||||||    
T  4245953 atggtatttgatagaacattatgacatcgtttgat 4245919  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 32949773 - 32949736
Alignment:
Q  169 tggtttttgatagaacattatgacatcgtttgattcat 206  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  32949773 tggtatttgatagaacattatgacgtcgtttgattcat 32949736  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 163270 - 163233
Alignment:
Q  173 ttttgatagaacattatgacatcgtttgattcatatag 210  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  163270 ttttgatagaacactatgacgtcgtttgattcatatag 163233  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 3442955 - 3442914
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcat 206  Q
    ||||||||||||||||||||| |||| | |||||||||||||    
T  3442955 gacatggtttttgatagaacactatggcgtcgtttgattcat 3442914  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 15025692 - 15025733
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcat 206  Q
    ||||| ||||||||||||||| |||| |||||||||||||||    
T  15025692 gacatagtttttgatagaacactatggcatcgtttgattcat 15025733  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 19334236 - 19334195
Alignment:
Q  165 gacatggtttttgatagaacattatgacatcgtttgattcat 206  Q
    ||||||||||||||||||||| |||||| || ||||||||||    
T  19334236 gacatggtttttgatagaacactatgacgtcatttgattcat 19334195  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 31807961 - 31808022
Alignment:
Q  9 acccttgttcatctccctcacacaaaatcaaa-aattttcttcatcaagataaaatacatga 69  Q
    ||||||||||||||||||||||||| | ||||  ||||||||||| |||| ||| |||||||    
T  31807961 acccttgttcatctccctcacacaacaacaaattattttcttcataaagaaaaattacatga 31808022  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 14225185 - 14225157
Alignment:
Q  182 aacattatgacatcgtttgattcatatag 210  Q
    |||||||||||||||||||||||||||||    
T  14225185 aacattatgacatcgtttgattcatatag 14225157  T

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