View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_56 (Length: 209)
Name: NF6625_low_56
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 47050859 - 47051037
Alignment:
| Q |
15 |
cacagaggatgagagttccagctaaagccgtcaacttctgtccaatagggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaa |
114 |
Q |
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| T |
47050859 |
cacagaggatgagagttccagctaaagccgtcaacttctgtccaatagggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaa |
47050958 |
T |
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| Q |
115 |
caaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatgatgagataatatctcaac |
193 |
Q |
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| T |
47050959 |
caaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatcatgagataatatctcaac |
47051037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 48106929 - 48107043
Alignment:
| Q |
49 |
cttctgtccaatagggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacc |
148 |
Q |
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| T |
48106929 |
cttctctccaaaaggggctcacaactatttgctcaagtttgtgggcatattttagaacattcataacaaattcaatttcataccaattgccaacacagcc |
48107028 |
T |
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| Q |
149 |
tctcaattcaataac |
163 |
Q |
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| T |
48107029 |
tcctaattcaataac |
48107043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 48895849 - 48895761
Alignment:
| Q |
74 |
tatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataa |
162 |
Q |
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| T |
48895849 |
tatttgctgaagcttgtgacaatattttagaacattcataacaaactcaatttcaaaccaattgccaacacaacctcccaattcaataa |
48895761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 47929518 - 47929427
Alignment:
| Q |
72 |
actatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
163 |
Q |
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| T |
47929518 |
actattttctcaagtttgtgtgcatattttataacattcataacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataac |
47929427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 48105963 - 48106051
Alignment:
| Q |
75 |
atttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
163 |
Q |
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| T |
48105963 |
atttgctcaagtttatgaacatattttaaaacattcctaacaaactcaatttcataccaattatcaacacaacctcccaattcaataac |
48106051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 48452879 - 48452960
Alignment:
| Q |
80 |
ctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
163 |
Q |
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| T |
48452879 |
ctcaagtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataac |
48452960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 39403657 - 39403566
Alignment:
| Q |
72 |
actatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
163 |
Q |
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| T |
39403657 |
actatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataac |
39403566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 50460410 - 50460310
Alignment:
| Q |
63 |
ggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataa |
162 |
Q |
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| T |
50460410 |
ggactcaaaactattcgctcatgtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataa |
50460311 |
T |
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| Q |
163 |
c |
163 |
Q |
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| T |
50460310 |
c |
50460310 |
T |
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