View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_57 (Length: 206)
Name: NF6625_low_57
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 37785929 - 37785763
Alignment:
| Q |
16 |
attattcttaaaattattttcaagatgttggtggagaggattagacctcatttaaatagtcttatcaagtagttttattcctaaacgaggtatcactaat |
115 |
Q |
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| T |
37785929 |
attatgcttaaaattattttcaaggtgttggtggggaggattagacctcatttaaatagtctta----gtagttttattcctaaacgaggtatcactaat |
37785834 |
T |
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| Q |
116 |
aatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgtt |
186 |
Q |
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| T |
37785833 |
aatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgtt |
37785763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 7020242 - 7020422
Alignment:
| Q |
17 |
ttattcttaaaattattttcaagatgttggtggagaggattagacctcatttaaatagtcttatca-----------agtagttttattcctaaacgagg |
105 |
Q |
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| T |
7020242 |
ttatgcttaaaattatttctaaggtgctagtggggaggattagacctcatttaaatagtcttatcagcccttttcaaagtagttttattcctaaacgagg |
7020341 |
T |
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| Q |
106 |
tatcactaataatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgtt |
186 |
Q |
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| T |
7020342 |
cacgactgataatgttattatcgcacacgaaatagttcatagcataaataaaaagaaagggaaaaaaggttatcttttgtt |
7020422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 54873094 - 54873274
Alignment:
| Q |
17 |
ttattcttaaaattattttcaagatgttggtggagaggattagacctcatttaaatagtcttatca-----------agtagttttattcctaaacgagg |
105 |
Q |
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| T |
54873094 |
ttatgcttaaaattatttctaaggtgctggtggggaggattagacctcatttaaatagccttatcagcccttttcaaagtagttttattcctaaacgaag |
54873193 |
T |
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| Q |
106 |
tatcactaataatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgtt |
186 |
Q |
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| ||| |||||| |||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||| |||| |
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| T |
54873194 |
cacgactgataatgttattatcgtacatgaaatagttcataacatgaataagaagaaagggaaaaaaggttatcttttgtt |
54873274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 55430380 - 55430308
Alignment:
| Q |
114 |
ataatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttatcttatgtt |
186 |
Q |
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| T |
55430380 |
ataatgctattatcgcagaggaaatagttcatagcatgaataagaagaaagggaaaaaaggttaacttttgtt |
55430308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 15919513 - 15919449
Alignment:
| Q |
114 |
ataatgctattatcgcacataaaatagttcatagcatgaataagaagaaaggggaaaaaggttat |
178 |
Q |
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|||||| |||||||||| | |||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
15919513 |
ataatgttattatcgcataggaaatagttcatagcatgaataagaagaaagggaaaaacggttat |
15919449 |
T |
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