View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_6 (Length: 601)
Name: NF6625_low_6
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 11 - 583
Target Start/End: Original strand, 38868267 - 38868838
Alignment:
| Q |
11 |
cacagaaattaacctggcctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcc |
110 |
Q |
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| T |
38868267 |
cacagaaattaacctggtctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcc |
38868366 |
T |
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| Q |
111 |
tacagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagtcctcttcaac |
210 |
Q |
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| T |
38868367 |
tatagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagtcctcttcaac |
38868466 |
T |
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| Q |
211 |
tgtacaccaagacaaatccagcaacctcgatttgtttagctttccaatctgagtaattgtcattcaattcccatcaatcaaacgtagaattctgagctgg |
310 |
Q |
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| T |
38868467 |
tgtacaccaagacaaatccagcaacctcgatttgtttagctttccaatc-gagtaattgtcattcaattcccatcaatcaaacgtagaattctgagctgg |
38868565 |
T |
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| Q |
311 |
ccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaattttataggaagtattcacgagatgccacc |
410 |
Q |
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| T |
38868566 |
ccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaattttataggaagtattcacgagatgccacc |
38868665 |
T |
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| Q |
411 |
gaaagaggcacaacatgctagctgcttcacatcacatgatcttgtctttatgatcacaatgcattaaaagacgaaaaaggatctatataagcttgttatt |
510 |
Q |
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| T |
38868666 |
gaaagaggcacaacatgctagctgcttcacatcacatgatcttgtctttatgatcacaatgcattaaaagacgaaaaaggatctatataagcttgttatt |
38868765 |
T |
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| Q |
511 |
atgtgccacattcacaaagcaccttgctcagacaaataatgggttcattatttagggcataatagtcttgagt |
583 |
Q |
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| T |
38868766 |
atgtgccacattcacaaagcaccttgctcagacaaataatgggttcattgtttagggcataatagtcttgagt |
38868838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 38806821 - 38806751
Alignment:
| Q |
182 |
aaactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
253 |
Q |
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| T |
38806821 |
aaactgatcatggta-agtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgtttagcttt |
38806751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 38849438 - 38849502
Alignment:
| Q |
189 |
tcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
253 |
Q |
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| T |
38849438 |
tcatggtattgtcctcttcaactatacactaagacaaatccaacaacctgaatttgtttagcttt |
38849502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 38869064 - 38869102
Alignment:
| Q |
388 |
ggaagtattcacgagatgccaccgaaagaggcacaacat |
426 |
Q |
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| T |
38869064 |
ggaagtattcacgagaagccaccgaaagaggcacaacat |
38869102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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