View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6625_low_8 (Length: 578)
Name: NF6625_low_8
Description: NF6625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6625_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 568
Target Start/End: Original strand, 33453926 - 33454476
Alignment:
| Q |
20 |
aagggttcataattttaaaaaattctatgaatagaaaattaattttcttctctattttccatgaagcaaattttcataaaaaatgaggaagaagattaac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33453926 |
aagggttcataattttaaaaaattctatgaatagaaaattaattttcttctctattttccatgaagcaaattttcatagaaaatgaggaagaagattaac |
33454025 |
T |
|
| Q |
120 |
tctcatcataagnnnnnnnnnnnnnnnnnataagttaactttaaacacaacatgttcgggtaaaattgaagttgaattagnnnnnnnatttaatttggnn |
219 |
Q |
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||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33454026 |
tctcaccataagttttggttttttgttttataagttaactttaaaaacaacatgttcgggtaaaattgaagttgaattagtttttttatttaatttggaa |
33454125 |
T |
|
| Q |
220 |
nnnnnttcatttaaacttcaaaatcacataatttgattttacgattcttgttttcgttttaacattaacacatcac--gactggtgattgttgaccacca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
33454126 |
aacaattcatttaaacttcaaaatcacataatttgattttacgattcttgtttttgttttaacattaacacatcacacgattggtgattgttgaccacca |
33454225 |
T |
|
| Q |
318 |
ccgatcatttaccctcattcttactatctttgatcaccaccaattaacaaccactccgtcgttcgctcaaatagttgtgtctactatctgctgatcacca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
33454226 |
ccgatcatttaccctcattcttactatctttgatcaccaccaattaacaaccacttcgtcgttcgctcaaatagttgcgtctactatctgccgatcacca |
33454325 |
T |
|
| Q |
418 |
ttccaaccatcaaccaccactccaccatcacttacccccactcttactacctttgatcaccaacaattaacaacaccgccgttcgctcaaatagttacat |
517 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
33454326 |
ttccaaccatcaaccaccactccgccatcacttacccccactcttactatctttgatcaccaccaattaacaacactgtcgttcgctcaaatagttacat |
33454425 |
T |
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| Q |
518 |
ctactatccgcttaccaccactaatcatttacctcattcttactacctttg |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33454426 |
ctactatccgcttaccaccactaatcatttacctcattgttactacctttg |
33454476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 311 - 394
Target Start/End: Original strand, 33454439 - 33454521
Alignment:
| Q |
311 |
accaccaccgatcatttaccctcattcttactatctttgatcaccaccaattaacaaccactccgtcgttcgctcaaatagttg |
394 |
Q |
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|||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
33454439 |
accaccactaatcatttacc-tcattgttactacctttgatcaccaccaattaacaaccactctgtcgtttgctcaaatagttg |
33454521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 2073437 - 2073387
Alignment:
| Q |
149 |
ataagttaactttaaacacaacatgttcgggtaaaattgaagttgaattag |
199 |
Q |
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| T |
2073437 |
ataagttaactttaaacataacatgttctagtaaaattgaagttgaattag |
2073387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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