View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6626_high_16 (Length: 332)
Name: NF6626_high_16
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 38571767 - 38571621
Alignment:
| Q |
18 |
atttctcacaaacaaaacaaaggcttatccacaagttctaatctaataaaaaagctataattgttaggttgaatgctgtaattgagtttgagttccggct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
38571767 |
atttctcacaaacaaaacaaaggcttatccacaagttctaatctaataaaaaagccataattgttaggttgaatgccgtaattgggtttgagttccggct |
38571668 |
T |
|
| Q |
118 |
gctccactcatatgtgtgcgagtttctaatgatcagtgtcatttttt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38571667 |
gctccactcatatgtgtgcgagtttctaatgactagtgtcatttttt |
38571621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 592788 - 592668
Alignment:
| Q |
196 |
catcaacagaaacaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttata |
292 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
592788 |
catcaaaagaaacaattccatcaaaattaacaacatggtagttgggggtgataaccttagacgacaattgaaaatgaatggaggtagtaataactttata |
592689 |
T |
|
| Q |
293 |
gtagatggtggtgatacattt |
313 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
592688 |
gtagatggtggtgatacattt |
592668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 579640 - 579760
Alignment:
| Q |
196 |
catcaacagaaacaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttata |
292 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||| | ||||| ||||||||||||| |
|
|
| T |
579640 |
catcaaaagaaacaattctatcaaaattaacaacatggtagttgggggtgataaacttaaacgacaattgaaaatgaaagcaggtaataataactttata |
579739 |
T |
|
| Q |
293 |
gtagatggtggtgatacattt |
313 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
579740 |
gtagatagtggtgatacattt |
579760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University