View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_high_26 (Length: 238)
Name: NF6626_high_26
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 54425800 - 54425692
Alignment:
| Q |
46 |
caaagatatcaaaatcaattctacctctattgattcaattttacctcctccaaaacaaagcatacagttgtaatgctatgaaagggaacccaatttcaaa |
145 |
Q |
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| T |
54425800 |
caaacatatcaaaatcaattctacctctattgattcaattttacctcctccaagacaaagcatacagttgtaatgctatgaaagggaacccaatttcaaa |
54425701 |
T |
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| Q |
146 |
gtgaaaacc |
154 |
Q |
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||||||||| |
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| T |
54425700 |
gtgaaaacc |
54425692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 54425670 - 54425604
Alignment:
| Q |
152 |
acccaataatttgtaatttgaaatatggaagaaagtttaaacctttgggcaacaagagcgagagagc |
218 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54425670 |
acccgataatttgtaatttgaaatttggaagaaagtttgaacctttgggcaacaagagcgagagagc |
54425604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54425905 - 54425855
Alignment:
| Q |
1 |
attcctttgaatgaactcattcaaaataactcatttttagaaatacaaaga |
51 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54425905 |
attcctttgaatgaactcattcataataactcatttttagaaatacaaaga |
54425855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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