View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_high_27 (Length: 232)
Name: NF6626_high_27
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26378565 - 26378790
Alignment:
| Q |
1 |
ccacgatcgcaacacaaccacaatcaaggccatatcatctgcaatcatttgcaataccaagcatcgcaacgtggtcgtgacttaaaacgttgttagtatt |
100 |
Q |
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| T |
26378565 |
ccacgatcgcaacacaaccacaatcacggccatatcatctgcaatcatttgcaataccaagcattgcaacgtggtcgtgacttaaaacgttgttagtatt |
26378664 |
T |
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| Q |
101 |
tacaagtattaggattgcataacaacttaatgtttgttttgtgcacaccaatacttcagatctaagacacgtcttagtatctgaaacattactaacattc |
200 |
Q |
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| T |
26378665 |
tacaagtattaggattgcataacaacttaatgtttgttttgtgcacaccaatacttcagatctaagacacgtcttagtatctgaaacattactaacattc |
26378764 |
T |
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| Q |
201 |
gtaattaattacatacaataacttat |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26378765 |
gtaattaattacatacaataacttat |
26378790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 26378949 - 26379044
Alignment:
| Q |
1 |
ccacgatcgcaacacaaccacaatcaaggccatatcatctgcaatcatttgcaataccaagcatcgcaacgtggtcgtgacttaaaacgttgttag |
96 |
Q |
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|||| ||||||||||||| |||| ||||||||||| ||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
26378949 |
ccacaatcgcaacacaactgcaattgaggccatatcagctgcaattcttcgcaataccgagcatcgcaacatggtcgtgacttaaaacgttgttag |
26379044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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