View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6626_high_6 (Length: 436)

Name: NF6626_high_6
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6626_high_6
NF6626_high_6
[»] chr1 (3 HSPs)
chr1 (14-436)||(28843016-28843437)
chr1 (221-323)||(49292970-49293072)
chr1 (267-323)||(15265638-15265694)
[»] chr2 (3 HSPs)
chr2 (220-323)||(43829826-43829929)
chr2 (230-323)||(43829621-43829715)
chr2 (219-272)||(30841557-30841610)
[»] chr7 (3 HSPs)
chr7 (221-272)||(31260803-31260854)
chr7 (163-217)||(3901035-3901089)
chr7 (219-279)||(8745875-8745935)
[»] chr4 (3 HSPs)
chr4 (243-301)||(4316041-4316099)
chr4 (339-405)||(54137254-54137320)
chr4 (219-323)||(36165466-36165570)
[»] scaffold0557 (1 HSPs)
scaffold0557 (286-323)||(4656-4693)
[»] scaffold0115 (1 HSPs)
scaffold0115 (266-323)||(46087-46144)
[»] chr3 (2 HSPs)
chr3 (219-276)||(42643053-42643110)
chr3 (219-303)||(50196878-50196962)
[»] scaffold1432 (1 HSPs)
scaffold1432 (243-279)||(971-1007)
[»] chr5 (2 HSPs)
chr5 (230-274)||(28431980-28432024)
chr5 (345-405)||(33408153-33408213)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 28843016 - 28843437
Alignment:
Q  14 aaataaccaaccttgatcaaacattgtcctgcaatggaaaatggtaaccaaagcataccaacacacaaacaaccaacacaacattgttttcctataagag 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28843016 aaataaccaaccttaatcaaacattgtcctgcaatggaaaatggtaatcagagcataccaa-acacaaacaaccaacacaacattgttttcctataagag 28843114  T
Q  114 gtggatcattaacgatattctccaaagacaaactaaacttcaatttccaaataaaataatgcatcaaaagttgttgaccaacaaactaggagagtgaaac 213  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28843115 gtggatcattgacgatattccccaaagacaaactaaacttcaatttccaaataaaacaatgcatcaaaagttgttgaccaacaaactaggagagtgaaac 28843214  T
Q  214 ttgtcggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaataatatgggaacctgagcaatgtgaaactagaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  28843215 ttgtcggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaataatatgtgaacctcatcaatgtgaaactagaaa 28843314  T
Q  314 caaactacaatggcatgtgtccaactctcacattgcaatccttaatccgactctcatagcaaattaaatgagtttgaatttcatcctaaaaggtagaaac 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  28843315 caaactacaatggcatgtgtccaactctcacattgcaatccttaatccgactctgataccaaattaaatgagtttgaatttcatcctaaaaggtagaaac 28843414  T
Q  414 aaaggataatgatactcaagcat 436  Q
    |||||||||||||||||||||||    
T  28843415 aaaggataatgatactcaagcat 28843437  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 49293072 - 49292970
Alignment:
Q  221 atctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaataatatgggaacctgagcaatgtgaaactagaaacaaacta 320  Q
    |||||||||||||| |||| | || ||| |||| |||||||||||||||||||| |||||| | |||||| ||||||||||||  |||||||||||||||    
T  49293072 atctcatctcaaaagctagctcaagggacgagggtattcaaaaatatttatacactcaatagtttgggaatctgagcaatgtgggactagaaacaaacta 49292973  T
Q  321 caa 323  Q
    |||    
T  49292972 caa 49292970  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 15265694 - 15265638
Alignment:
Q  267 tttatacattcaataatatgggaacctgagcaatgtgaaactagaaacaaactacaa 323  Q
    ||||||||||||| ||| | |||| ||||||||||||| ||||||||||||||||||    
T  15265694 tttatacattcaacaatgtaggaatctgagcaatgtgagactagaaacaaactacaa 15265638  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 43829826 - 43829929
Alignment:
Q  220 gatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaataatatgggaacctgagcaatgtgaaactagaaacaaact 319  Q
    ||||||||| ||| | |||| | || |||||||| || ||||  |||||| |||| ||||  || |||||||||||||||||||  ||||||||||||||    
T  43829826 gatctcatcccaacagctagctcaatggatgagggtactcaagcatatttctacactcaacgatctgggaacctgagcaatgtgggactagaaacaaact 43829925  T
Q  320 acaa 323  Q
    ||||    
T  43829926 acaa 43829929  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 43829621 - 43829715
Alignment:
Q  230 caaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaataatatgggaa-cctgagcaatgtgaaactagaaacaaactacaa 323  Q
    ||||| |||| | |||| ||||||||| ||||| ||||||||||| |||| | |  ||||| ||||| |||||||  ||||||||||||||||||    
T  43829621 caaaagctagctcaaagaatgaggatactcaaacatatttatacactcaacagtccgggaatcctgaacaatgtgggactagaaacaaactacaa 43829715  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 30841557 - 30841610
Alignment:
Q  219 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttata 272  Q
    |||||||||| || ||  |||||||||||||||||||| ||||| |||||||||    
T  30841557 ggatctcatcccacaagttagtttaaaggatgaggatactcaaacatatttata 30841610  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 31260803 - 31260854
Alignment:
Q  221 atctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttata 272  Q
    ||||||||  ||||| ||||||||| |||||||||||||||| |||||||||    
T  31260803 atctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 31260854  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 3901089 - 3901035
Alignment:
Q  163 aataaaataatgcatcaaaagttgttgaccaacaaactaggagagtgaaacttgt 217  Q
    ||||||||||||||||||| ||| |||||| ||||| || ||||| |||||||||    
T  3901089 aataaaataatgcatcaaaggttcttgaccgacaaattaagagagcgaaacttgt 3901035  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 8745875 - 8745935
Alignment:
Q  219 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaa 279  Q
    |||||||||| |||||  ||| |||||||||||||||| || || ||||||||||| ||||    
T  8745875 ggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaa 8745935  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 4316041 - 4316099
Alignment:
Q  243 aaaggatgaggatattcaaaaatatttatacattcaataatatgggaacctgagcaatg 301  Q
    |||||||||||||||||||  ||||||||||  |||||| | ||| |||||||||||||    
T  4316041 aaaggatgaggatattcaatcatatttatacgctcaatagtctggaaacctgagcaatg 4316099  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 54137254 - 54137320
Alignment:
Q  339 tctcacattgcaatccttaatccgactctcatagcaaattaaatgagtttgaatttcatcctaaaag 405  Q
    |||||||||||||||||||| |||||||| ||| ||  |||| |||| |||||| |||||| |||||    
T  54137254 tctcacattgcaatccttaacccgactctgataccatgttaattgagcttgaatctcatcccaaaag 54137320  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 36165466 - 36165570
Alignment:
Q  219 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaataatatgggaacctgagcaatgtgaaactagaaacaaac 318  Q
    |||||||||| ||||| ||||   ||| ||||||| || ||||| || |||||||| |||| ||   |||||||| |||||||||  ||||||||||||     
T  36165466 ggatctcatcccaaaatctagcacaaaagatgagggtactcaaacatctttatacactcaacaacccgggaaccttagcaatgtgggactagaaacaaat 36165565  T
Q  319 tacaa 323  Q
    |||||    
T  36165566 tacaa 36165570  T

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Target: scaffold0557 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 4693 - 4656
Alignment:
Q  286 gggaacctgagcaatgtgaaactagaaacaaactacaa 323  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  4693 gggaatctgagcaatgtgatactagaaacaaactacaa 4656  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 46144 - 46087
Alignment:
Q  266 atttatacattcaataatatgggaacctgagcaatgtgaaactagaaacaaactacaa 323  Q
    |||||||||||||| ||  ||| |||||||||||||||   |||||||||||||||||    
T  46144 atttatacattcaacaagttggaaacctgagcaatgtgtggctagaaacaaactacaa 46087  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 42643110 - 42643053
Alignment:
Q  219 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacatt 276  Q
    ||||||||||||||||| ||  ||||| ||||| | |||||||| |||||||||||||    
T  42643110 ggatctcatctcaaaaattaacttaaatgatgatggtattcaaatatatttatacatt 42643053  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 50196962 - 50196878
Alignment:
Q  219 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttatacattcaataatatgggaacctgagcaatgtg 303  Q
    |||||||||| |||||  ||| | ||||||||||| |||| ||| ||||||||||| |||| | || || ||| |||||||||||    
T  50196962 ggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagtacggaaacatgagcaatgtg 50196878  T

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Target: scaffold1432 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 971 - 1007
Alignment:
Q  243 aaaggatgaggatattcaaaaatatttatacattcaa 279  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  971 aaaggatgaggatactcaaacatatttatacattcaa 1007  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 28431980 - 28432024
Alignment:
Q  230 caaaaactagtttaaaggatgaggatattcaaaaatatttataca 274  Q
    ||||| ||||||||||||||||||||| ||||  |||||||||||    
T  28431980 caaaagctagtttaaaggatgaggatactcaagcatatttataca 28432024  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 33408153 - 33408213
Alignment:
Q  345 attgcaatccttaatccgactctcatagcaaattaaatgagtttgaatttcatcctaaaag 405  Q
    ||||||||| |||| |||||||| ||| ||  |||||||||||||||| |||||| |||||    
T  33408153 attgcaatcattaaaccgactctgataccatgttaaatgagtttgaatctcatcccaaaag 33408213  T

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