View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6626_high_7 (Length: 433)
Name: NF6626_high_7
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 18607543 - 18607355
Alignment:
| Q |
98 |
caaacgtgcatgcttaccgttcaagaagataagacatttcctccttaatggacaaagcactctcaagcaagatttttacttcttgtgtcatattctgtca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18607543 |
caaacgtgcatgcttaccgttcaagaagataagacatttcctccttaatggacaaagcactctcaagcaagatttttacttcttgtgtcatattctgtca |
18607444 |
T |
|
| Q |
198 |
tatgttagagaaatcaaattagtctatggaannnnnnncttctaactacgaattttcggcaaagattaccattctggtagttaaaatcc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18607443 |
tatgttagagaaatcaaattagtctatggaaattttttcttctaactacgaatttttggcaaagattaccattctggtagttaaaatcc |
18607355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 18607292 - 18607221
Alignment:
| Q |
350 |
gtcataaaatgacaatgacaacacatgtactttaaactctacatttgtataacacttaagataagatatatt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18607292 |
gtcataaaatgacaatgacaacacatgtactttaaactctacatttgtctaacacttaagataagatatatt |
18607221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University