View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_high_8 (Length: 428)
Name: NF6626_high_8
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 51196783 - 51196384
Alignment:
| Q |
18 |
atttttctggcgagacggttgccaaaattgaaattcctttcagagttccatatgggtttcatggagccttcatgccaatctcattccaggattcttatta |
117 |
Q |
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| T |
51196783 |
atttttctggcgagacggttgccaaaattgaaattcctttcagagttccatatgggtttcatggagccttcatgccaatctcattccaggattcttatta |
51196684 |
T |
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| Q |
118 |
aatgcatttgtttatatatcaacatatatgccttaaaacctgagatcatattactaaattttaaaaatgcagcaactgtgttagtagagtaactaaataa |
217 |
Q |
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| T |
51196683 |
aatgcatttgtttatatatcaacatatatgccttaaaacctgagatcatattactaaattttgaaaatgcagcaactgtgttagtagagtaactaaataa |
51196584 |
T |
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| Q |
218 |
acttcattcatccttttgttcatggattttaagattcatagtgtttctctttgtatgttgttatggattaataaaaataattgcaagtgatgagaataac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51196583 |
acttcattcatccttttgttcatggattttaagattcatagtgtttctctttgtatgttgttatggattaataacaataattgcaagtgatgagaataac |
51196484 |
T |
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| Q |
318 |
cataaccgttgatacaagagcataattaaccaactattcaaaaagtcaataaattgatagtgtatttttctaaaaagtttgaacattctcctttcttcat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51196483 |
cataaccgttgatacaagagcataattaaccaactattcaaaaagtcaataaattgatagtgtatttttctaaaaagtttgaacattctcctttcttcat |
51196384 |
T |
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