View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_high_9 (Length: 406)
Name: NF6626_high_9
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 211 - 364
Target Start/End: Complemental strand, 6358491 - 6358338
Alignment:
| Q |
211 |
ttcagagatacattacgagagagtcaaatccacaaaaacatcataaccgtatctaaaacaaaatgtgtaaatccccataagcttaaccttgtgagtggtc |
310 |
Q |
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| T |
6358491 |
ttcagagatacattacgagagagtcaaatccacaaaaacatcataaccgtatctaaaacaaaatgtgtaaatccccataagcttaaccttgtgagtggtc |
6358392 |
T |
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| Q |
311 |
tgtaatccccatatcattatcaactaatttatgttttgaagcataaacctttgg |
364 |
Q |
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| T |
6358391 |
tgtaatccccatatcattatcaactaatttatgttttgaagcataaacctttgg |
6358338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6358749 - 6358531
Alignment:
| Q |
1 |
acttattattgcaaatggtaacttctacttagacgagataaaaaata--------aaacacatacctcagttcctttg-----atgctacaaatcaccta |
87 |
Q |
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| T |
6358749 |
acttattattgcaaatggtaacttctacttagacgagataaaaaaaataaaaaaaaaacacatacctcagttcctttgggtacatgctgcaaatcaccta |
6358650 |
T |
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| Q |
88 |
ctgatgctatctttccctcaaaagccaacactgaattgggcaa-gcatgcagctatatgataaaatcatgattagaaaaataacaaagaaatgggataat |
186 |
Q |
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| T |
6358649 |
ctgatgctatctttccctcaaaagccaacactgaattgggcaaagcatgcagctatatgataaaatcatgattagaaaaataacaaagaaatgggataat |
6358550 |
T |
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| Q |
187 |
aagacgtcacaaatggtat |
205 |
Q |
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| T |
6358549 |
aagacgtcacaaatggtat |
6358531 |
T |
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