View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_1 (Length: 614)
Name: NF6626_low_1
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Complemental strand, 45361899 - 45361329
Alignment:
| Q |
18 |
cattttgtaaggattgttagaggcaatgaaatggaatgaaagtaaaggaactgcaaacagagcaaccaagcgattgatgccggagcattgatcgggagag |
117 |
Q |
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| T |
45361899 |
cattttgtaaggattgttagaggcaatgaaatggaatgaaagtaaaggaactgcaaacagagcaacgaagcgattgatgccggagcattgatcgggagag |
45361800 |
T |
|
| Q |
118 |
aatatcttccaccatttcactgaaccataagctaatatcatagccacgtaaagtggcaccattgatgtcatcacatggtagaaatctgtcaacgttatca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45361799 |
aatatcttccaccatttcactgaaccataagctaatatcatagccacgtaaagtggcaccattgatgtcatcacatggtagaaatctgttaacgttatca |
45361700 |
T |
|
| Q |
218 |
tctttcttaaatgaaattgaaaagagcatgtgnnnnnnnaggtgtatgtatgtatgtatgtaatgagcagaatacaaatactatttttaagcattgaact |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
45361699 |
tctttcttaaatgaaattgaaaagagcatgtgtttttttaggtgtatgtatgta--------atgagcagaatacaaatactatttttaagctttgaact |
45361608 |
T |
|
| Q |
318 |
ctccaaagggaagtttttatttctttggagaaagagaggtgttactgttattatctgataacttactttaggttgaatggaatttttcagtctgtcagta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
45361607 |
ctccaaagggaagtttttatttctttggagaaagagaggtgttactgttattatctgataacttactttaggttgaatggaattttccagtctgtcaata |
45361508 |
T |
|
| Q |
418 |
aaaggcatagaaaaagcatttttta---aacaacatctcactactgctcctttttctactctcctctcaactcctttttgtttataaaattaatctaaaa |
514 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45361507 |
aaaggcatagaaaaagcattttgtaaacaacaacatctcactactgctcctttttctactctcctctcaactcctttttgtttataaaattaatctaaaa |
45361408 |
T |
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| Q |
515 |
ttgttttttgctatttactactactatattggaaactagtattttatattttattaagctagcacatttattttcacggatattct |
600 |
Q |
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| T |
45361407 |
ttgttttttgctatttactactactatattggaaactag-------tattttattaagctaacacatttattttcacggatattct |
45361329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 25038719 - 25038531
Alignment:
| Q |
18 |
cattttgtaaggattgttagaggcaatgaaatggaatgaaagtaaaggaactgcaaacagagcaaccaagcgattgatgccggagcattgatcgggagag |
117 |
Q |
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|||||||||||||||||| || || ||||||||||||||||| | ||||||||||| || ||||| || || ||||| || || |||||||| || || |
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| T |
25038719 |
cattttgtaaggattgtttgatgctatgaaatggaatgaaagaagtggaactgcaaagagtgcaacaaaacggttgattcctgaacattgatcaggtgaa |
25038620 |
T |
|
| Q |
118 |
aatatcttccaccatttcactgaaccataagctaatatcatagccacgtaaagtggcaccattgatgtcatcacatggtagaaatctgt |
206 |
Q |
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||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||| |||||| ||||||||||||||||| |
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| T |
25038619 |
aatattttccaccattttactgatccataagctaagatcatagctacataaagtggcaccattgctgtcatgacatggtagaaatctgt |
25038531 |
T |
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