View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_11 (Length: 386)
Name: NF6626_low_11
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 101 - 379
Target Start/End: Complemental strand, 37734381 - 37734103
Alignment:
| Q |
101 |
caacaagaattaattacctcaaaatcatgatccaaacgacgtcgtttcaaagaaatcgttgtaactaacttcgaaataacctcatcgtggttatcgttgc |
200 |
Q |
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| T |
37734381 |
caacaagaaataattacctcaaaatcatgatccaaacgacgtcgtttcaaagaaatcgttgtaactaacttcgaaataacctcatcgtggttatcgttgc |
37734282 |
T |
|
| Q |
201 |
acttgctaaccgaaaccgactcatcgctaccggaggaactcgaagccggtggaggctgcgccgccgttgacgaccaaggtacaacctgattatcaccgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37734281 |
acttgctaaccgaaaccgactcatcgctaccggaggaactcgaagccggtggaggctgcgccgccgttgacgaccaaggtacaacctgattatcaccgtc |
37734182 |
T |
|
| Q |
301 |
ctcatcaccatcaacatcctcatcatcctcatcggaatcgtaatccgtatcttcttcattgtcattgtcacctttgctt |
379 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37734181 |
ctcatcaccatcaacatcatcatcatcctcatcggaatcgtaatccgtatcttcttcattgtcattgtcaccttcgctt |
37734103 |
T |
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