View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_12 (Length: 384)
Name: NF6626_low_12
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 1227220 - 1227513
Alignment:
| Q |
16 |
tcaaaaacattgaaagagaccaacctgttgaaatagaagtgggaaaacattctgaaaacttcaaggcgtcgaaattaaccagaacaaccaaagaaactcg |
115 |
Q |
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| T |
1227220 |
tcaaaaacattgaaagagaccaacctgttgaaatagaagtgggaaaacattctcaaaacttcaaggcgtcgaaattaaccagaacaaccaaagaaactcg |
1227319 |
T |
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| Q |
116 |
aaaaacaatactaagatcaagattgaaaatctaaaccaatccaacgggtcattcttgaagagatcagtttggagttgcaacaaatctaaagtttctcagg |
215 |
Q |
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| T |
1227320 |
aaaaacaatactaagatcaagattgaaaatataaaccaatccaacgggtcattcttgaagagatcagtttggagttgcaacaaatctaaagtttctcagg |
1227419 |
T |
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| Q |
216 |
atcgccaaaatatgatatcattctttcttcttcttaacctaatggacattatattctagcttctattcataaaaagaattatgaaaggttatgc |
309 |
Q |
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| T |
1227420 |
atcgccaaaatatgatatcattctttcttcttcttaacctaatggacattatattctagcttctattcataaaaagaattatgaaaggttatgc |
1227513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 1230904 - 1230959
Alignment:
| Q |
228 |
tgatatcattctttcttcttcttaacctaatggacattatattctagcttctattcataaa |
288 |
Q |
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| T |
1230904 |
tgatattattctttcttcttcttaacctaattgac-----attctagcttctattcataaa |
1230959 |
T |
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