View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_14 (Length: 361)
Name: NF6626_low_14
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 34880348 - 34880678
Alignment:
| Q |
14 |
aaatagcaatgaagcagtcgtgtgcgtccttcttgaaagagtgaaggttgcataattgacgtgcatgcattgggaagaatcgtggagagtcctacccaat |
113 |
Q |
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| T |
34880348 |
aaatagcaatgaagcagtcgtgtgcgtccttcttgaaagagtgaaggttgcataattgacgtgcatgcattgggaagaatcgtggagagtcctacccaat |
34880447 |
T |
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| Q |
114 |
ttaaaatatcatacctaacacttcgaaagaaagaacaatcgacgaacaaatgttgagaatgttcttcagaaccgcaaccaaaaaataaactttcacataa |
213 |
Q |
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| T |
34880448 |
tcaaaatatcatacctaacacttcgaaagaaagaacaatcgacgaacaaatgttgagaatattcttcagaaccgcaaccaaaatataaactttcacacaa |
34880547 |
T |
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| Q |
214 |
tgttttttgaaatgacagttgctagctagctgacattagtcgatcagttagagattaacttgatcataagggtttacttgctagtcaaataaccatagtt |
313 |
Q |
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| T |
34880548 |
tgttttttgaattgacagttactaactagctgacattagtcgatcagttagagattaacttgatcataagggtttacttgctagtcaaataaccatagtt |
34880647 |
T |
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| Q |
314 |
ggcataaccatctctatatatgtggttattg |
344 |
Q |
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| T |
34880648 |
ggcataaccatctctatatatatggttattg |
34880678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 38163122 - 38163173
Alignment:
| Q |
261 |
ttagagattaacttgatcataagggtttacttgctagtcaaataaccatagtt |
313 |
Q |
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| T |
38163122 |
ttagaaattaacttgatcata-gggtttacttggtagtcaagtaaccatagtt |
38163173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 34015914 - 34015965
Alignment:
| Q |
261 |
ttagagattaacttgatcataagggtttacttgctagtcaaataaccatagtt |
313 |
Q |
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| T |
34015914 |
ttagagattaacttgatcat-agagtttacttgtcagtcaagtaaccatagtt |
34015965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 31254619 - 31254529
Alignment:
| Q |
257 |
tcagttagagattaacttgatcataagggtttacttgctagtcaaataaccata----gttggcataaccatctctatatatgtggttattg |
344 |
Q |
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| T |
31254619 |
tcagttagagattaacttgattata-gggtttactttctagtcaagtaactataattagttagcataaccatctctatatatatggttattg |
31254529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 4208383 - 4208332
Alignment:
| Q |
258 |
cagttagagattaacttgatcataagggtttacttgctagtcaaataaccata |
310 |
Q |
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| T |
4208383 |
cagttagagattaacatggtcata-ggatttacttgctagtcaagtaaccata |
4208332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 29661922 - 29661870
Alignment:
| Q |
257 |
tcagttagagattaacttgatcataagggtttacttgctagtcaaataaccata |
310 |
Q |
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| T |
29661922 |
tcagttagagattaacttgatcat-agagtttacttgttagtcaattaaccata |
29661870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 17070651 - 17070739
Alignment:
| Q |
259 |
agttagagattaacttgatcataagggtttacttgctagtcaaataaccatagt----tggcataaccatctctatatatgtggttattg |
344 |
Q |
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| T |
17070651 |
agttatagattaactttatca-aagggtttacttgtgagtcaagtaaccatagtaagttagcataatcatctctatatatatggttattg |
17070739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 17577621 - 17577533
Alignment:
| Q |
259 |
agttagagattaacttgatcataagggtttacttgctagtcaaataaccatagt----tggcataaccatctctatatatgtggttattg |
344 |
Q |
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| T |
17577621 |
agttatagattaactttatca-aagggtttacttgtgagtcaagtaaccatagtaagttagcataatcatctctatatatatggttattg |
17577533 |
T |
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