View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_17 (Length: 330)
Name: NF6626_low_17
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 31823669 - 31823941
Alignment:
| Q |
18 |
gtaagtgactgaacattggcgcaataatatttttcttgagagcttggtttaattatgctccaaggnnnnnnnttgaggaaaggaaacaatatatatttta |
117 |
Q |
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| T |
31823669 |
gtaagtgactgaacattggcgcaataatatttttcttaagagcttggttgaattatgctccaaggaaaaaatttgaggaaaggaaacaatatat----ta |
31823764 |
T |
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| Q |
118 |
caacggatttggatcatctgaagtgattaaaagttgttattatacatgatttgttataatgtacctacaatatttatataatttattaattaacgtgata |
217 |
Q |
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| T |
31823765 |
caacggatttggatcatccgaagtgaataaaggttgttattgtacgtgatttgtta--atgtacctacaatatttatataatttattaattaacgtgata |
31823862 |
T |
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| Q |
218 |
ttactcaatcttcactctaaagtttgttgttcgctttagagaagctggatccttttacaactacacgatatcacgagag |
296 |
Q |
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| T |
31823863 |
ttcctcaatcttcactctaaggtgagttgttcgctttagaggagctggatccttttacaactacatgatatcacgagag |
31823941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 38603061 - 38603089
Alignment:
| Q |
162 |
catgatttgttataatgtacctacaatat |
190 |
Q |
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| T |
38603061 |
catgatttgttataatgtacctacaatat |
38603089 |
T |
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