View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6626_low_18 (Length: 280)

Name: NF6626_low_18
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6626_low_18
NF6626_low_18
[»] chr5 (3 HSPs)
chr5 (110-265)||(25792675-25792839)
chr5 (112-265)||(25755412-25755575)
chr5 (1-51)||(27895944-27895994)
[»] chr1 (3 HSPs)
chr1 (1-45)||(6394663-6394708)
chr1 (1-51)||(9902610-9902660)
chr1 (1-45)||(47446680-47446724)
[»] chr8 (2 HSPs)
chr8 (1-45)||(13841896-13841940)
chr8 (1-45)||(24820345-24820389)
[»] chr6 (2 HSPs)
chr6 (2-45)||(13462981-13463024)
chr6 (1-51)||(24111142-24111192)
[»] chr4 (6 HSPs)
chr4 (1-51)||(4386365-4386415)
chr4 (1-51)||(22020163-22020213)
chr4 (4-45)||(11796635-11796676)
chr4 (1-53)||(2253994-2254046)
chr4 (1-41)||(5535761-5535801)
chr4 (1-45)||(37255730-37255774)
[»] chr7 (3 HSPs)
chr7 (1-51)||(19688146-19688197)
chr7 (1-45)||(8169144-8169188)
chr7 (1-45)||(8169145-8169189)
[»] chr3 (1 HSPs)
chr3 (1-45)||(39836914-39836958)
[»] chr2 (1 HSPs)
chr2 (1-45)||(41824308-41824352)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 110 - 265
Target Start/End: Complemental strand, 25792839 - 25792675
Alignment:
Q  110 gtagggcatgtgaataggagaggaagtaaacgaccgtagcaggaggaagaaaatccaggtttcagtgtcgatcagtgtagagagaattttctccaatttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25792839 gtagggcatgtgaataggagaggaagtaaacgaccgtagcaggaggaagaaaatccaggtttcagtgtcgatcagtgt-gagagaattttctccaatttt 25792741  T
Q  210 gttccg----------aattgagtgaaatcaacgccaaattcaccatgaatgttagatacattaac 265  Q
    ||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25792740 gttccgaattgagtctaattgagtgaaatcaacgccaaattcaccatgaatgttagatacattaac 25792675  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 25755412 - 25755575
Alignment:
Q  112 agggcatgtgaataggagaggaagtaaacgaccgtagcaggaggaagaaaatccaggtttcagtgtcgatcagtgtagagagaattttctccaattttgt 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25755412 agggcatgtgaataggagaggaagtaaacgaccctagcaggaggaagaaaatccaggtttcagtgtcgatcagtgtagagagaattttctccaattttgt 25755511  T
Q  212 tccga----------attgagtgaaatcaacgccaaattcaccatgaatgttagatacattaac 265  Q
    | |||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25755512 tacgaattgagtttgattgagtgaaatcaacgccaaattcaccatgaatgttagatacattaac 25755575  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27895944 - 27895994
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcatttaataaat 51  Q
    |||||||||||||||||| ||||| ||| | |||||||||||||| |||||    
T  27895944 ataaatgatgtatgtagtctatatataggtcacatacatcatttattaaat 27895994  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6394663 - 6394708
Alignment:
Q  1 ataaatgatgtatgtagtttat-atgtagattacatacatcattta 45  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  6394663 ataaatgatgtatgtagtttataatgtagattacatacatcattta 6394708  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9902660 - 9902610
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcatttaataaat 51  Q
    ||||||||| |||||||||||||| ||||  ||||||||||||||||||||    
T  9902660 ataaatgatatatgtagtttatatatagaccacatacatcatttaataaat 9902610  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47446724 - 47446680
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||    
T  47446724 ataaatgatgtatgtagtctatatgtagatcacatacataattta 47446680  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13841940 - 13841896
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  13841940 ataaatgatgtatgtagtttatatgtagactaaatacatcattta 13841896  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24820345 - 24820389
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    ||||||||||||||| ||||||||  |||| ||||||||||||||    
T  24820345 ataaatgatgtatgtggtttatataaagatcacatacatcattta 24820389  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 13463024 - 13462981
Alignment:
Q  2 taaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  13463024 taaatgatgtatgtggtttatatatagattacatacatcattta 13462981  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24111192 - 24111142
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcatttaataaat 51  Q
    ||||||||||||| |||||||||| || |  ||||||||||||||||||||    
T  24111192 ataaatgatgtatatagtttatatataaaccacatacatcatttaataaat 24111142  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4386415 - 4386365
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcatttaataaat 51  Q
    ||||||||| |||||||||||||| ||||  ||||||||||||||||||||    
T  4386415 ataaatgatctatgtagtttatatatagaccacatacatcatttaataaat 4386365  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22020163 - 22020213
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcatttaataaat 51  Q
    ||||||||| ||||||||||| |||||||| ||| |||||||||| |||||    
T  22020163 ataaatgatatatgtagtttacatgtagatcacacacatcatttattaaat 22020213  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 11796635 - 11796676
Alignment:
Q  4 aatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    |||||| ||||| |||||||| ||||||||||||||||||||    
T  11796635 aatgatatatgtggtttatatatagattacatacatcattta 11796676  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2254046 - 2253994
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcatttaataaataa 53  Q
    ||||||||| |||||||| ||||| ||||  |||||||||||||||| |||||    
T  2254046 ataaatgatatatgtagtctatatatagaccacatacatcatttaatgaataa 2253994  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5535761 - 5535801
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatca 41  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  5535761 ataaatgatgtatgtagtttatatatagaccacatacatca 5535801  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37255774 - 37255730
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    |||||| ||||||||||||||||| ||||  ||||||||||||||    
T  37255774 ataaattatgtatgtagtttatatatagaccacatacatcattta 37255730  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19688146 - 19688197
Alignment:
Q  1 ataaatgatgtatgtagttta-tatgtagattacatacatcatttaataaat 51  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  19688146 ataaatgatgtatgtagtttattatgtagaccacatacatcatttattaaat 19688197  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8169144 - 8169188
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    ||||||||||||||| || ||||| |||| |||||||||||||||    
T  8169144 ataaatgatgtatgtggtctatatatagactacatacatcattta 8169188  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8169189 - 8169145
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||    
T  8169189 ataaatgatgtatgtagtctatatatagaccacatacatcattta 8169145  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39836958 - 39836914
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    ||||||||||||||| || ||||| |||| |||||||||||||||    
T  39836958 ataaatgatgtatgtggtctatatatagaatacatacatcattta 39836914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41824308 - 41824352
Alignment:
Q  1 ataaatgatgtatgtagtttatatgtagattacatacatcattta 45  Q
    |||||| ||||||||||||||||| ||||  ||||||||||||||    
T  41824308 ataaattatgtatgtagtttatatatagaccacatacatcattta 41824352  T

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