View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_19 (Length: 270)
Name: NF6626_low_19
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 26563247 - 26563017
Alignment:
| Q |
18 |
atcatatagctagatatctaactaggagattatgtgagtgacttcaaatnnnnnnnnnnnnnagcaccattgtttgtgggtgtaagattgagtattttag |
117 |
Q |
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| T |
26563247 |
atcatgtagctagatttctaactaggagattaggtgagtgacttcaaatagagagaga----agcaccattgtttgtgggtgtaagattgagtattttgg |
26563152 |
T |
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| Q |
118 |
tggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgag |
217 |
Q |
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| T |
26563151 |
tggcttcctccaaaacccatgattctggggattgatagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgag |
26563052 |
T |
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| Q |
218 |
tgccaccactgccattcctttaggaaactcttcag |
252 |
Q |
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| T |
26563051 |
tgccatcactgccattcctttaggaaactcttcag |
26563017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 26560327 - 26560569
Alignment:
| Q |
5 |
aagttgataatcgatcatatagctagatatctaactaggagattatgtgagtgacttcaaatnnnnnnnnnnnnnagcaccattgtttgtgggtgtaaga |
104 |
Q |
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| T |
26560327 |
aagtcgataatcaatcatgtaagtagatatctagctaggagattaggtgagtgacttcaaatagagagaga----agaaccattatctgttggtgtaaga |
26560422 |
T |
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| Q |
105 |
ttgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatga |
204 |
Q |
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| T |
26560423 |
ttgagtatcttggtggctgcctccaaaacccatgattctgggaatcgataaagagatgaggaagcaccatagcaaaaagcaagcatgttagtgttgatga |
26560522 |
T |
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| Q |
205 |
ctcctgtattgagtgccaccactgccattcctttaggaaactcttca |
251 |
Q |
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| T |
26560523 |
cccctggattgagtgccaccactgccattactttaggcaactcttca |
26560569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 80 - 252
Target Start/End: Original strand, 24889857 - 24890029
Alignment:
| Q |
80 |
agcaccattgtttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgacagagagatgaggaagcaccgtagcaa |
179 |
Q |
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||||||||||| || ||||||||||||||||| || ||||||||||| || |||||||||||||||||||| | || |||||||||||||| ||||| |
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| T |
24889857 |
agcaccattgtctgcaggtgtaagattgagtatcttggtggctgcctctgaagcccatgattctggggattgataaagcgatgaggaagcaccatagcat |
24889956 |
T |
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| Q |
180 |
gacgcaagtatgttagtgctgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcag |
252 |
Q |
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| T |
24889957 |
gaagcaagcatgtcagtgttgatgactcctggattcagtgccactactgccattcctttaggcaactcttcag |
24890029 |
T |
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