View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_2 (Length: 545)
Name: NF6626_low_2
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Original strand, 39839333 - 39839844
Alignment:
| Q |
12 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839333 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
39839432 |
T |
|
| Q |
112 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839433 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
39839532 |
T |
|
| Q |
212 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattctttt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39839533 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattctttt |
39839632 |
T |
|
| Q |
312 |
ttaacttttgtgnnnnnnnnnntctaattgggctgttctgnnnnnnnnatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttga |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839633 |
ttaacttttgtg---aaaaaaatctaattgggctgttctgttttttttatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttga |
39839729 |
T |
|
| Q |
412 |
attagcggttatgatgttgaagtggttaccactttggattgtagacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggt |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39839730 |
attagcggttatgatgttgaagtggttaccactttggattgtggacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggt |
39839829 |
T |
|
| Q |
512 |
atcaaaagaccatca |
526 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39839830 |
atcaaaagaccatca |
39839844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Complemental strand, 39733625 - 39733114
Alignment:
| Q |
12 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733625 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
39733526 |
T |
|
| Q |
112 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733525 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
39733426 |
T |
|
| Q |
212 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattctttt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39733425 |
cttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatatgtgtcagtgcttcatagtaattctttt |
39733326 |
T |
|
| Q |
312 |
ttaacttttgtgnnnnnnnnnntctaattgggctgttctgnnnnnnnnatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttga |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733325 |
ttaacttttgtg---aaaaaaatctaattgggctgttctgttttttttatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttga |
39733229 |
T |
|
| Q |
412 |
attagcggttatgatgttgaagtggttaccactttggattgtagacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733228 |
attagcggttatgatgttgaagtggttaccactttggattgtggacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggt |
39733129 |
T |
|
| Q |
512 |
atcaaaagaccatca |
526 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39733128 |
atcaaaagaccatca |
39733114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 31290573 - 31290622
Alignment:
| Q |
365 |
caggttcatgtgctaccaagagaaatatttggaatatcaacttttgaatt |
414 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31290573 |
caggctcatgtcttaccaagagaaatatttggaatatcaactcttgaatt |
31290622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 31290472 - 31290504
Alignment:
| Q |
18 |
ttgagtatatttgtaggtggcttgttgttgcta |
50 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
31290472 |
ttgagaatatttgtaggtggcttgttgttgcta |
31290504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 29857685 - 29857435
Alignment:
| Q |
12 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggact---ttctgaattcaaagg |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| || || ||||| ||||||||| ||| | |||||||| | | ||||||||| || |
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|
| T |
29857685 |
atgaagttgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaaggg |
29857586 |
T |
|
| Q |
109 |
tgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcactt |
208 |
Q |
| |
|
|||| || || ||||||||||||| || ||||| ||| |||| ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || ||| |
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|
| T |
29857585 |
tgaaattattcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctctt |
29857486 |
T |
|
| Q |
209 |
gatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggta |
259 |
Q |
| |
|
|||||| |||||||| |||| | |||||| || ||| |||||||||||||| |
|
|
| T |
29857485 |
gatctttgcaatcataatgcatcaccttctattgttcttcgtagctcggta |
29857435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 17407974 - 17408021
Alignment:
| Q |
13 |
tgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 17408116 - 17408175
Alignment:
| Q |
155 |
ggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt |
214 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||| | || ||||||||| |
|
|
| T |
17408116 |
ggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatctt |
17408175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 475
Target Start/End: Complemental strand, 29857150 - 29857039
Alignment:
| Q |
364 |
acaggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttatgatgttgaagtggttaccactttggattgtagacaaactt |
463 |
Q |
| |
|
|||||||||||| | || |||||| | ||||| | |||||| |||| ||| || ||||||||| |||| ||||||||| ||||||| || ||||| || |
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|
| T |
29857150 |
acaggttcatgttttgcctagagaagtttttgggaaatcaacatttggattggcagttatgatgatgaaatggttaccagtttggatagttgacaagatt |
29857051 |
T |
|
| Q |
464 |
ttgttgattttg |
475 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29857050 |
ttgttgattttg |
29857039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 450
Target Start/End: Original strand, 17408332 - 17408416
Alignment:
| Q |
366 |
aggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttatgatgttgaagtggttaccactttggat |
450 |
Q |
| |
|
||||||||||| |||| || |||||||| |||| |||||||| ||| |||| |||||| || |||| |||||||| ||||||| |
|
|
| T |
17408332 |
aggttcatgtgttaccgagggaaatattcggaaaatcaacttatgaggtagctgttatgttgatgaaaaggttaccaatttggat |
17408416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 19040219 - 19040190
Alignment:
| Q |
275 |
tctggtatctgtgtcagtgcttcatagtaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
19040219 |
tctggtatctgtgtcagtgcttcatagtaa |
19040190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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