View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_22 (Length: 256)
Name: NF6626_low_22
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 22646871 - 22646631
Alignment:
| Q |
1 |
tcctttgaaggtccctatgtttctgagacgtttgttaagtaacataatttttatgagggataatttcgttaggcgcatagttcttctattagannnnnnn |
100 |
Q |
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| T |
22646871 |
tcctttgaaggtccctatgtttgtgagacgtttgttaagtaacataatttctatgaaggataatttcattaggcgcatagtttttctattagattttttt |
22646772 |
T |
|
| Q |
101 |
nnnnnnnnnnngtgaggggttgtggtgtggagaaaaatgttgatcatatttttatgagtagtgatttttctgatagtttttggtctcttattttgcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
22646771 |
tt---------gtgaggggttgtggtgtggagaaaaatgttgatcatctttttatgagtagtgatttttctggtagtttttgatctcttattttgcaata |
22646681 |
T |
|
| Q |
201 |
gttaggaattaattcaacacttttgttggatctctccgaccctttgattc |
250 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22646680 |
gtcaggaattaattcaacacttttgttggatctctccgaccctttgattc |
22646631 |
T |
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