View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_23 (Length: 250)
Name: NF6626_low_23
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 35053687 - 35053473
Alignment:
| Q |
20 |
catagtccaagttaagaagaagaaattctcaccaatggattgtaacattgtgttcaacatagttagtgaccgttactattacagtgtcatcctctcttgc |
119 |
Q |
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| T |
35053687 |
catagtccaagttaagaagaagaaattctcactagtggattgtaacattgtgttcaacatagttagtgaccgttactattacagtgtcatcctctcttgc |
35053588 |
T |
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| Q |
120 |
atgcaaagttggccctgggaattttccattgacttagacaaaagattttgttgagcaaagc--tgtttcattcttcattaccacctgtacacattgacca |
217 |
Q |
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| T |
35053587 |
atacaaagttggccctgggaattttccattgaccgagacaaaagattttgttgagcaaagctttgtttcattcttcattaccacctgtacacattgacca |
35053488 |
T |
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| Q |
218 |
tcaagaaatgtttag |
232 |
Q |
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| T |
35053487 |
tcaagaaatgtttag |
35053473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 35069968 - 35069769
Alignment:
| Q |
28 |
aagttaagaagaagaaattctcaccaatggattgtaacattgtgttcaacatagttagtgaccgttactattacagtgtcatcctctcttgcatgcaaag |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| ||||||||| || ||||||| || || |
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| T |
35069968 |
aagttaagaagaagaaattctcaccaatggattgtaacattgtgttgaacaaggttagtgacccttactattagagtgtcatcttcccttgcatacagag |
35069869 |
T |
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| Q |
128 |
ttggccctgggaattttccattgacttagacaaaagattttgttgagcaaagc--tgtttcattcttcattaccacctgtacacattgaccatcaagaaa |
225 |
Q |
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| T |
35069868 |
ttgggcctgggaattttccattgactgagacaaaagattttgttgagcaaagctttgtttcattcttcagtaccacctgcacacattgaccatcatgaaa |
35069769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 41074440 - 41074490
Alignment:
| Q |
92 |
ttactattacagtgtcatcctctcttgcatgcaaagttggccctgggaatt |
142 |
Q |
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| T |
41074440 |
ttactattacagtgtcatcccctcttgcatatagagttggccctgagaatt |
41074490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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