View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_24 (Length: 250)
Name: NF6626_low_24
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_24 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32465247 - 32465495
Alignment:
| Q |
1 |
tttgtagagagaagttgccacattttatggtgcctaagacggttgtgtttaaggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32465247 |
tttgtagagagaagttgccacattttatggtgcctaagacggttgtgtttaaggaggagttgccaaagacttcaactggaaagattcaaaaacatgtgct |
32465346 |
T |
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| Q |
101 |
taggagggttgctagggctatggggtccttgccaatactaccaccactactacttccaagtcgcatttaatcatgcaacatgc-------ttcccattaa |
193 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32465347 |
tagaagggttgctagggctatggggtccttgccaatactaccaccactactacttccaagtcgcatttaatcatgcaacatgcttcccaattcccattaa |
32465446 |
T |
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| Q |
194 |
tgatttatgcatttttgagatgaagagggagagagtgagagagtataat |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32465447 |
tgatttatgcatttttgagatgaagagggagagaatgagagagtataat |
32465495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 32455888 - 32455775
Alignment:
| Q |
1 |
tttgtagagagaagttgccacattttatggtgcctaagacggttgtgtttaaggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgct |
100 |
Q |
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|||||| |||||||||||| ||||||||| ||||||| || ||||||||| | | || ||||||||||| |||||||||||| |||||||||||||||| |
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| T |
32455888 |
tttgtaaagagaagttgccgcattttatgatgcctaaaacaattgtgtttatgaaggaattgccaaagacatcaaccggaaaggttcaaaaacatgtgct |
32455789 |
T |
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| Q |
101 |
taggagggttgcta |
114 |
Q |
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| T |
32455788 |
tagaaaggttgcta |
32455775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 24677 - 24790
Alignment:
| Q |
1 |
tttgtagagagaagttgccacattttatggtgcctaagacggttgtgtttaaggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgct |
100 |
Q |
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||||||| ||| ||||||||||||||||| |||||| || ||||| | | | | || |||||||||||||||||||||||| || ||||||||||||| |
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| T |
24677 |
tttgtagggaggagttgccacattttatgacgcctaaaacaattgtgatcatgaaggaattgccaaagacttcaaccggaaaggttaaaaaacatgtgct |
24776 |
T |
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| Q |
101 |
taggagggttgcta |
114 |
Q |
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||| | |||||||| |
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| T |
24777 |
tagaaaggttgcta |
24790 |
T |
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