View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_26 (Length: 246)
Name: NF6626_low_26
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_26 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32464950 - 32464723
Alignment:
| Q |
1 |
tattcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaaccgttacaccatcattctttacactttcaccagtgggtccga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32464950 |
tattcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaaccgttacaccatcattctttacactttcaccagtgggtccga |
32464851 |
T |
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| Q |
101 |
ccacatcaacctccgccacccccattctcctcacaccttgccttgccttcatcctcgccctctccgtcgccggaaacctatcccattctctcttccaagc |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32464850 |
ccacatcaacctccgccacccccaccctcctcacaccttgccttgccttcatcctcgccctctccgtcgccggaaacctatcccattctctcttccaagc |
32464751 |
T |
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| Q |
201 |
acacgacactatcactccacaagtctcc |
228 |
Q |
| |
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||||||||||||||||||||| |||||| |
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| T |
32464750 |
acacgacactatcactccacatgtctcc |
32464723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 32456188 - 32456399
Alignment:
| Q |
4 |
tcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaaccgttacaccatcattctttacactttcaccagtgggtccgacca |
103 |
Q |
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|||||||| |||||||| | ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
32456188 |
tcatctttaaaataacctaacataacacatgcaccttttacaacgatctcaccaacggttacaccatcattcttcacactttcaccagtgggtcccacca |
32456287 |
T |
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| Q |
104 |
catcaacctccgccacccccattctcctcacaccttgccttgccttcatcctcgccctctccgtcgccggaaacctatcccattctctcttccaagcaca |
203 |
Q |
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| T |
32456288 |
catcaacctccgccacccccaccttcctcacaccttgcctcgccttcatcctcgccttctccgttgccggaaacctatcccattctctcttccaagcaca |
32456387 |
T |
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| Q |
204 |
cgacactatcac |
215 |
Q |
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|||||| ||||| |
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| T |
32456388 |
cgacacaatcac |
32456399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 24377 - 24178
Alignment:
| Q |
4 |
tcatcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaaccgttacaccatcattctttacactttcaccagtgggtccgacca |
103 |
Q |
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||||||||||| ||||| | |||||||||||||||||||||||| || |||||| |||||| |||||| | ||| |||||||| || |||||||| |||| |
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| T |
24377 |
tcatcttttaagtaacctaacataacacaagcaccttttacaactatctcaccagccgttataccatcgtgcttcacactttctccggtgggtcccacca |
24278 |
T |
|
| Q |
104 |
catcaacctccgccacccccattctcctcacaccttgccttgccttcatcctcgccctctccgtcgccggaaacctatcccattctctcttccaagcaca |
203 |
Q |
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|||||||||||| ||| |||| || |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||| |
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| T |
24277 |
catcaacctccgtcacacccacccttctcacaccttgcctcgccttcatcctcgccttccccgtcgccggaaacctatcccattcccttttccaagcaca |
24178 |
T |
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