View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6626_low_3 (Length: 542)

Name: NF6626_low_3
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6626_low_3
NF6626_low_3
[»] chr1 (2 HSPs)
chr1 (10-523)||(28843409-28843911)
chr1 (90-119)||(30602335-30602364)
[»] chr3 (1 HSPs)
chr3 (26-116)||(22312204-22312295)
[»] chr4 (5 HSPs)
chr4 (15-57)||(34542407-34542449)
chr4 (90-124)||(25050079-25050113)
chr4 (90-118)||(18523317-18523345)
chr4 (82-118)||(36165558-36165594)
chr4 (90-118)||(41389526-41389554)
[»] chr7 (3 HSPs)
chr7 (26-71)||(31260835-31260880)
chr7 (90-118)||(5473272-5473300)
chr7 (82-118)||(33804213-33804249)
[»] scaffold0557 (1 HSPs)
scaffold0557 (90-118)||(4632-4660)
[»] chr5 (1 HSPs)
chr5 (90-118)||(31540330-31540358)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 523
Target Start/End: Original strand, 28843409 - 28843911
Alignment:
Q  10 agaagcaaaggataatgatactcaagcatatttatacactcaacggtccgaaaacttgagcattgtgaaactaaa--cgaattacaaacaacttcaaaac 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  | || |||||||||||||||||     
T  28843409 agaaacaaaggataatgatactcaagcatatttatacactcaacggtccgaaaacttgagcgatgtgaaactaaaaacaaactacaaacaacttcaaaat 28843508  T
Q  108 caacttcaacaatttcacctttgttccattgtgaagcaataaacaaagttgtgcatgttcacctctttgattttgaacatatggccgattggtcgttttt 207  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||      ||||||||    
T  28843509 caacttcaacaatttcacctttgttccatcgtgaagcaataaacaaagttgtgcatgttcacctctgtgattttgaacatatggcc------tcgttttt 28843602  T
Q  208 tgtcatacaggttgcatatgttgtgatcaagatgaggaatgaggaaaataacatgcccccaatcagttcattgttcaataagtgtcaattgttatgagaa 307  Q
    |||||||||||||||||||||||||||||||||| ||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28843603 tgtcatacaggttgcatatgttgtgatcaagatgtggaa-------aataacatgcacccaatcagttcattgttcaataagtgtcaattgttatgagaa 28843695  T
Q  308 agttgatctttagcatgctttaaagctgattgttccctctgttcagcaagtttttatagattatttctttgtagctacaaaatttagaacgaggaataaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28843696 agttgatctttagcatgctttaaagctgattgttccctctgttcagcaagtttttatagattatttctttgtaactacaaaatttagaacgaggaataaa 28843795  T
Q  408 gatcaatgatggctattaatactattttatggtatgaagtagtacaaatgtcaaagtttagagaaacacgtcagaagagaacatggttattgctcaacat 507  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28843796 gatcaatgatggctattaatactattttatggtatggagtagtacaaatgtcaaagtttagaggaacacgtcagaagagaacatggttattgctcaacat 28843895  T
Q  508 ggttggatatgttgga 523  Q
    ||||||||||||||||    
T  28843896 ggttggatatgttgga 28843911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 30602364 - 30602335
Alignment:
Q  90 tacaaacaacttcaaaaccaacttcaacaa 119  Q
    ||||||||||||||||||||||||||||||    
T  30602364 tacaaacaacttcaaaaccaacttcaacaa 30602335  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 22312295 - 22312204
Alignment:
Q  26 gatactcaagcatatttatacactcaacggtccgaaaacttgagcattgtgaaactaa--acgaattacaaacaacttcaaaaccaacttcaa 116  Q
    ||||||||| |||||||||| ||||||| |||   ||||| ||||||||||| |||||  || || |||||||||||||||||||||||||||    
T  22312295 gatactcaaacatatttatatactcaacagtcaagaaact-gagcattgtgagactaataacaaactacaaacaacttcaaaaccaacttcaa 22312204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 34542407 - 34542449
Alignment:
Q  15 caaaggataatgatactcaagcatatttatacactcaacggtc 57  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  34542407 caaaggatgatgatactcaaacatatttatacactcaacggtc 34542449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 25050113 - 25050079
Alignment:
Q  90 tacaaacaacttcaaaaccaacttcaacaatttca 124  Q
    |||||||||||||||||||||||||||||| ||||    
T  25050113 tacaaacaacttcaaaaccaacttcaacaaattca 25050079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 18523317 - 18523345
Alignment:
Q  90 tacaaacaacttcaaaaccaacttcaaca 118  Q
    |||||||||||||||||||||||||||||    
T  18523317 tacaaacaacttcaaaaccaacttcaaca 18523345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 36165558 - 36165594
Alignment:
Q  82 aaacgaattacaaacaacttcaaaaccaacttcaaca 118  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  36165558 aaacaaattacaaacaacttcaaaactaacttcaaca 36165594  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 41389526 - 41389554
Alignment:
Q  90 tacaaacaacttcaaaaccaacttcaaca 118  Q
    |||||||||||||||||||||||||||||    
T  41389526 tacaaacaacttcaaaaccaacttcaaca 41389554  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 31260835 - 31260880
Alignment:
Q  26 gatactcaagcatatttatacactcaacggtccgaaaacttgagca 71  Q
    |||| |||| |||||||||| |||||||||||||| ||||||||||    
T  31260835 gatattcaaacatatttataaactcaacggtccgagaacttgagca 31260880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 5473300 - 5473272
Alignment:
Q  90 tacaaacaacttcaaaaccaacttcaaca 118  Q
    |||||||||||||||||||||||||||||    
T  5473300 tacaaacaacttcaaaaccaacttcaaca 5473272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 33804213 - 33804249
Alignment:
Q  82 aaacgaattacaaacaacttcaaaaccaacttcaaca 118  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  33804213 aaacgaactacaaacaacttcaaaaccaactccaaca 33804249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 4660 - 4632
Alignment:
Q  90 tacaaacaacttcaaaaccaacttcaaca 118  Q
    |||||||||||||||||||||||||||||    
T  4660 tacaaacaacttcaaaaccaacttcaaca 4632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 31540330 - 31540358
Alignment:
Q  90 tacaaacaacttcaaaaccaacttcaaca 118  Q
    |||||||||||||||||||||||||||||    
T  31540330 tacaaacaacttcaaaaccaacttcaaca 31540358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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