View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_30 (Length: 205)
Name: NF6626_low_30
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 7675237 - 7675053
Alignment:
| Q |
1 |
cataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtgg |
100 |
Q |
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| T |
7675237 |
cataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtgg |
7675138 |
T |
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| Q |
101 |
tagtgatgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
185 |
Q |
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| T |
7675137 |
tagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
7675053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 7659599 - 7659426
Alignment:
| Q |
12 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
111 |
Q |
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| T |
7659599 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
7659500 |
T |
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| Q |
112 |
ttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
185 |
Q |
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| T |
7659499 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccataga |
7659426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 7624086 - 7624259
Alignment:
| Q |
12 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
111 |
Q |
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| T |
7624086 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
7624185 |
T |
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| Q |
112 |
ttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
185 |
Q |
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| T |
7624186 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccataga |
7624259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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