View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_4 (Length: 488)
Name: NF6626_low_4
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 2358067 - 2358314
Alignment:
| Q |
13 |
aaaattgcggggacaaaattaattaagtgtggtaaagtagatagatttatctcgtggaggggtaatactnnnnnnnnncaatgtgtaggtaaatacataa |
112 |
Q |
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| T |
2358067 |
aaaattacggggacaaaattaattaagtgtggtaaagtagatagatttatctcgtggaggggtaatactaaaaaaaaacaatgtgtaggtaaatacataa |
2358166 |
T |
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| Q |
113 |
ttgaaatgtcctcgactactttgttcttttgatacttgtgtacgtacttgcaaaacgaattaatgctactctgtatatatctcatcacgtacactctcaa |
212 |
Q |
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| T |
2358167 |
ttgaaatgtcctcgactacttggttcttttgatacttgtgtacgtacttgcaaaacgaattaatgctactctgtatatatctcatcacgtacactctcaa |
2358266 |
T |
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| Q |
213 |
ccatatttatttcttaatcaatggctatgtataatttcagaaggaaaa |
260 |
Q |
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| T |
2358267 |
ccatatttatttcttaatcaatggctatgtataatttcagaaggaaaa |
2358314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 257 - 446
Target Start/End: Original strand, 2358359 - 2358548
Alignment:
| Q |
257 |
aaaattagaatatattgctgttaagaactataatatatcattcatatctcaaacattatatgatataccaacaattaatattatagattttctttgacaa |
356 |
Q |
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| T |
2358359 |
aaaattagaatatattgctgttaagaactataatatatcattcatatctaaaacattatatgatataccaacaattaatattatagattttctttgacaa |
2358458 |
T |
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| Q |
357 |
acttacatttttagattagggaagtcaacatgcacacctccattcaaagaaagaaacaactaccaacccgaatgaaaaatttatcgtgaa |
446 |
Q |
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| T |
2358459 |
acttacatttttagattagggaagtcaacatgcacacctccattcaaagaaagaaacaaccaccaacccgaatgaaaaatttatcgtgaa |
2358548 |
T |
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