View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6626_low_5 (Length: 463)
Name: NF6626_low_5
Description: NF6626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6626_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 197 - 453
Target Start/End: Complemental strand, 22647109 - 22646853
Alignment:
| Q |
197 |
ggtttgatgatggtcctttatgtgttaggtttagatggnnnnnnnagttgtctaaaaatattttggtattaattgttgagatgtgtaatttagggaggga |
296 |
Q |
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| T |
22647109 |
ggtttgatgatggtcctttatgtgttaggtttagatggtttttttagttgtctaaaaatattttggtattaattgttgagatgtgtaatttagggaggga |
22647010 |
T |
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| Q |
297 |
tgttgatggttggaagtggcagatgagcaaggtggtggtgtattgtgatttgttataaaacattttttgcaggttgatgtgcaaataaatgagattggaa |
396 |
Q |
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| T |
22647009 |
tattgatggttggaagtggcagatgagcaaggtggtggagtattgtgatttgttataaaacattttttgcaggttgatgtgcaaataaatgagattggaa |
22646910 |
T |
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| Q |
397 |
gctcgatcctgatcaaggctatacatttagtcgatgtctcctttgaaggtccctatg |
453 |
Q |
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| T |
22646909 |
gctcgatcctgatgaaggctatacatttagttgatgtctcctttgaaggtccctatg |
22646853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 22647683 - 22647489
Alignment:
| Q |
1 |
ataacagtgttttattgacaaggaatcaccttttgttgttgcttatataagggacgaacttgtttttaatccttgcagccaaatctgaaaactccaacac |
100 |
Q |
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| T |
22647683 |
ataacagtgttttattgacaaggaatcaccttttgttgttgcttatataagggacgaacttgtttttaatccttgcagccaaatctgaaaactccaacac |
22647584 |
T |
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| Q |
101 |
aagaaaatgataatgtggataactggttcgacgataatgtggtgggagtggtgggtaatggggtcattttgcttttctagtttgatctttggttttggtt |
200 |
Q |
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| T |
22647583 |
aaaaaaatgataatgtgaataactggttcgacgataatgtgg---------tgggtaatggggtcattttgcttttctagtttgatctttggttttggtt |
22647493 |
T |
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